Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,737,511 – 5,737,625 |
Length | 114 |
Max. P | 0.634516 |
Location | 5,737,511 – 5,737,625 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.96 |
Mean single sequence MFE | -29.38 |
Consensus MFE | -22.20 |
Energy contribution | -22.32 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.12 |
Mean z-score | -1.66 |
Structure conservation index | 0.76 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.634516 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5737511 114 + 22224390 AGAAUUGAUAUAAAUCUUCUAUCUUACAUUGUAUUUUUUUGGCGAGUGUACUAUCUUGCUACUUUGUUGAGAGGCAGGUGCUU------GUGCUUUUCAAGCGAUCGCCAAACGGUUUCC .((((((((((((...............))))))...((((((((.........((((((.(((....))).))))))(((((------(.......)))))).)))))))))))))).. ( -27.56) >DroSec_CAF1 10539 113 + 1 AGAAUUUAUAGAAAUCUUCUAUCUUACAUUGUAUUU-UUUGGCGAGUGUACUAUCUCUCUACUUUGUUGAGAGGCAGGUGCUU------GUGCUUUUCAAGCGAUCGCCAAACGGUUUCC ..........((((((........(((...)))...-((((((((.....((..(((((.........)))))..)).(((((------(.......)))))).)))))))).)))))). ( -29.80) >DroSim_CAF1 11115 113 + 1 AGAGUUUAUACAAAUCUUCUAUCUUACAUUGUAUUU-UUUGGCGAGUGUACUAUCUCACUACUUUGUUGAGAGGCAGGUGCUU------GUGCUUUUCAAGCGAUCGCCAAACGGUUUCC .......((((((...............))))))..-(((((((((((........)))....(((((((((((((.(....)------.)))))))).)))))))))))))........ ( -26.76) >DroEre_CAF1 10824 113 + 1 CACAUUGAAAAAAAUCUUACAUUUCAUGUUGAUUUU-UUUGGCGAGUGUACUAUCUCUCCACAUUGUUGAGAGGCAGGUGCUU------GUGCUUUUCAAGCAAUCGCCAAACGGUUUCC ...(((((((((((((..((((...)))).))))))-)))(((((.....((..(((((.((...)).)))))..)).(((((------(.......)))))).)))))...)))).... ( -31.70) >DroYak_CAF1 11892 119 + 1 CGAAUCGAAAUAAAUCUUCAAUCUAAGAUUGUAUUU-UUCGGCGAGUGUACUAUCUCUCUACAUUGUUGGGAGGCAGGUGCUUGUGCUUGUGCUUUUGAAGCAAUCGCCAAACGGUUUCC .(((((((((((((((((......)))))).)))))-...(((((.(((.....(((((.........)))))(((((((....))))))).........))).)))))...)))))).. ( -31.10) >consensus AGAAUUGAUAUAAAUCUUCUAUCUUACAUUGUAUUU_UUUGGCGAGUGUACUAUCUCUCUACUUUGUUGAGAGGCAGGUGCUU______GUGCUUUUCAAGCGAUCGCCAAACGGUUUCC .....................................((((((((..(((((.((((((.((...)).))))))..))))).........((((.....)))).))))))))........ (-22.20 = -22.32 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:40 2006