Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,726,788 – 5,726,884 |
Length | 96 |
Max. P | 0.941588 |
Location | 5,726,788 – 5,726,884 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 96.88 |
Mean single sequence MFE | -34.80 |
Consensus MFE | -31.54 |
Energy contribution | -31.82 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.07 |
Mean z-score | -1.60 |
Structure conservation index | 0.91 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941588 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5726788 96 + 22224390 ACAUCAACGAGGUGCUGGAUGACUCCGUCAUCCGCCAGCAAGCGGAGCGGGGUACCCUGGACUUUCGAGCAUAUGCCAACUUUGUGAUCAACAUCC ..((((.((((((.(..(...(((((((..(((((......))))))))))))...)..)......(.((....))).))))))))))........ ( -29.70) >DroSec_CAF1 506 96 + 1 ACAUCAACGAGGUGCUGGAUGACUCCGUCAUCCGCCAGCAGGCGGAGCGGGGUACCCUGGACUUUCGGGCAUAUGCCAACUUUGUGAUCAACAUCC ..((((.((((((.(..(...(((((((..((((((....)))))))))))))...)..).......(((....))).))))))))))........ ( -36.80) >DroSim_CAF1 1282 96 + 1 ACAUCAACGAGGUGCUGGAUGACUCCGUCAUCCGCCAGCAGGCGGAGCGGGGUACCCUGGACUUUCGGGCAUAUGCCAACUUUGUGAUCAACAUCC ..((((.((((((.(..(...(((((((..((((((....)))))))))))))...)..).......(((....))).))))))))))........ ( -36.80) >DroEre_CAF1 512 96 + 1 ACAUCAACGAGGUGCUGGAUGACUCUGUCAUCCGCCAGCAGGCGGAGCGGGGUACCCUGGACUUUCGGGCGUAUGCCAACUUUGUGAUCAACAUCC ..((((.((((((((((((((((...)))))))(((....)))..)))((.(((((((((....))))).)))).)).))))))))))........ ( -38.40) >DroYak_CAF1 1355 96 + 1 ACAUCAACGAGGUGCUGGAUGAUUCCGUCAUCCGCCAGCAGGCGGAGCGUGGUACCCUCGACUUUCGGGCGUAUGCCAACUUUGUGAUCAACAUCC ..((((.((((((((.(((....)))....((((((....)))))))).((((((.((((.....)))).))..))))))))))))))........ ( -32.30) >consensus ACAUCAACGAGGUGCUGGAUGACUCCGUCAUCCGCCAGCAGGCGGAGCGGGGUACCCUGGACUUUCGGGCAUAUGCCAACUUUGUGAUCAACAUCC ..((((.((((((.(..(...(((((((..((((((....)))))))))))))...)..).......(((....))).))))))))))........ (-31.54 = -31.82 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:31 2006