Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,724,636 – 5,724,730 |
Length | 94 |
Max. P | 0.621314 |
Location | 5,724,636 – 5,724,730 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 76.11 |
Mean single sequence MFE | -33.44 |
Consensus MFE | -20.27 |
Energy contribution | -21.81 |
Covariance contribution | 1.53 |
Combinations/Pair | 1.20 |
Mean z-score | -1.41 |
Structure conservation index | 0.61 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.621314 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5724636 94 + 22224390 CUCCGACUACGGCGGCUACCGUCACUCCGGCGGCCAUUAGAAUCUUCUCGCUCUCCAUGGCUUGAGAUUUCCGAUGGCUGGUUUUCCGGUGCAG--------------------- ..........(((((...))))).(.(((((((((((..(((...(((((((......)))..)))).)))..))))))).....)))).)...--------------------- ( -31.30) >DroSec_CAF1 1830 94 + 1 CUCCGACUACGGCGGCUACCGUCACUCCGGCGGCCAUUAGAAUCUUCUCGCUCUCCAUGGCUUAAGAUUUCUGAUGGCUGCUUUUCCGGUGCAG--------------------- ..(((.....(((((...))))).....((((((((((((((((((...(((......)))..)))).))))))))))))))....))).....--------------------- ( -35.50) >DroSim_CAF1 10105 94 + 1 CUCCGACUACGGCGGCUACCGUCACUCCGGCGGCCAUUAGAAUCUUCUCGCCCGCCAUGGCUUCCCCUUUCUGAUGGCUGCUUUUCCGGUGCAG--------------------- ..(((.....(((((...))))).....((((((((((((((.......(((......))).......))))))))))))))....))).....--------------------- ( -34.94) >DroEre_CAF1 6101 94 + 1 CUCCCACAACGGCGGCCACCGUCACUCCAGCGGCCAUUAGAAUCUUUUCGCUCUCCAUGGCUCAGGACUAGUGAUUUUUGGUUUUCUAGUGCGG--------------------- ..(((((...((..((((..((((((((...((((((.(((..........)))..))))))..)))...)))))...))))..))..))).))--------------------- ( -23.80) >DroYak_CAF1 5944 94 + 1 CUCCCACCACGGCGGCCACCGUCACUCCGGCGGCCAUUAGAAUCUUCUCGCUCUCCAUGGCUUCGGAUUUCCGAUGGCUGGUUAACCGGUGCGG--------------------- ..((((((..(((((((.(((......))).))))....((......)))))......((((((((....)))).))))((....)))))).))--------------------- ( -34.10) >DroAna_CAF1 5581 109 + 1 CUCCUACAACGGCGGCCACCGUCACCCCGGCAGCCAUUAGAAUCUUCUCGCUUUCCAUUGGAU------CCUGGUGUCCUGAUUCUCGGGGCUGGCGGAGGCUAACAGCGGGCGG (.((..(...(((((...))))).(((((.(((((...((((((....((((.(((...))).------...))))....))))))...))))).))).))......)..)).). ( -41.00) >consensus CUCCGACUACGGCGGCCACCGUCACUCCGGCGGCCAUUAGAAUCUUCUCGCUCUCCAUGGCUUAAGAUUUCUGAUGGCUGGUUUUCCGGUGCAG_____________________ ..........(((((...))))).(.((((((((((((((((.......(((......))).......)))))))))))).....)))).)........................ (-20.27 = -21.81 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:25 2006