Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,721,448 – 5,721,538 |
Length | 90 |
Max. P | 0.967176 |
Location | 5,721,448 – 5,721,538 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 76.01 |
Mean single sequence MFE | -24.50 |
Consensus MFE | -19.31 |
Energy contribution | -20.88 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.20 |
Mean z-score | -1.87 |
Structure conservation index | 0.79 |
SVM decision value | 1.61 |
SVM RNA-class probability | 0.967176 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5721448 90 + 22224390 UUCAAUUUCCUGGUCCACCACCUCUUUCUGCUUCUGCGGCUGCGCGGGCUCCUGUGCCUCCAAUUCAACUGGACCUGGUGACUUCACCUG--------------------------- ...........((((((............((....))((..((((((....))))))..))........)))))).((((....))))..--------------------------- ( -29.00) >DroSim_CAF1 3664 117 + 1 GUCCAUUUCCUGGUCCACCUCCACUUCCUGCUCUUGCGGCUGCGCGGGCUCCUGUGCCUGCAAUUCAACUGAAACUGGUGACUUCACCUGCUCCUGNNNNNNNNNNNNNNNNNNNNN (.(((.....))).)............((((....))))..((((((((......))))))...............((((....)))).)).......................... ( -24.80) >DroEre_CAF1 3038 90 + 1 GUCAAUUUCCUGGUCCAUUUCAGCUUCCUGCUCUUGCGGCUGCGCUUGUUCCUGUACCUGCAAUUCAACUGGAACUGGUGAUUUCACCUG--------------------------- ...........((((((....(((.....))).((((((.((((........)))).))))))......))).)))((((....))))..--------------------------- ( -19.90) >DroYak_CAF1 2843 90 + 1 GUCAAUUUCCUGGUCCAUCUCCACUUCCCGCUCUUGCGGCUGCGCUUCUUCCUGUGCCUGCAAUUCAACUGGAUCUGGUGACUUCACCUG--------------------------- ((((....((.((((((...........(((....)))((.((((........))))..))........)))))).))))))........--------------------------- ( -24.30) >consensus GUCAAUUUCCUGGUCCACCUCCACUUCCUGCUCUUGCGGCUGCGCGGGCUCCUGUGCCUGCAAUUCAACUGGAACUGGUGACUUCACCUG___________________________ ...........((((((..........((((....))))....((((((......))))))........)))))).((((....))))............................. (-19.31 = -20.88 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:23 2006