Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,721,208 – 5,721,328 |
Length | 120 |
Max. P | 0.632251 |
Location | 5,721,208 – 5,721,328 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.92 |
Mean single sequence MFE | -37.64 |
Consensus MFE | -22.83 |
Energy contribution | -22.95 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.25 |
Mean z-score | -1.75 |
Structure conservation index | 0.61 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.632251 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5721208 120 - 22224390 ACCGAGGUGGUUACCAUUCCAGCUCCUCUUCAUCUCAAAGGGACACAACAACUGGGGCUGCCAUUGGCUGCCCCACCGCCACCACCACCUCCUCCAGCAGCGGAACAAGUCCCCGAGACU ...(((.(((........))).))).......((((...(((((........((((((.(((...))).))))))((((....................)))).....))))).)))).. ( -41.45) >DroSim_CAF1 3424 120 - 1 ACCGAGGUGGUUACCAUUCCAGCUCCUCUUCAUCUCAAAGGGGCACAACAACUGGGGCUGCCAUUGGCUGCCCCACCGCCACCACCACCUCCACCAGCAGCGGAAGAAGUUCCCGAGACU ...((((((((..........((((((...........))))))........((((((.(((...))).))))))........))))))))........(.((((....)))))...... ( -40.60) >DroEre_CAF1 2798 120 - 1 ACCGAGGUGGUCACCAUUCCAGCUCCUCUUCGUCUUAAAGGGGCACAACAACUGGGGCUGCCACUGGCUAACCCAUCGCCACCACCACCUCCGCCAGCAGAGGAUGAAGUCCCCGAGACU ...(((.(((........))).)))......(((((...(((((........((((...(((...)))...))))..........((((((.(....).)))).))..))))).))))). ( -37.70) >DroYak_CAF1 2603 120 - 1 ACCGAGGUGGUCACCAUUCCAGCUCCACUUCGUCUCAAAGGGGCACAACAACUGAGUCUGCCACUGGCUGCCCCACCGCCACCACCACCUCCUCCAGCAGAGGAAGAAGUCCCCGAGACU ...(((((((..............)))))))(((((...(((((.((.....))((((.......))))))))).............(.(((((.....))))).)........))))). ( -37.14) >DroAna_CAF1 2163 102 - 1 ACGGAGGUGGUUACCAUUCCCGCGCCACUGUGUCUAAA------------------GCUGCCACUGGGUCCUCCGGCCCCGCCACCACCUCGAGGGGGCAUGAAUGAUAUCCCAGACACG .(((..((((...))))..))).......((((((...------------------.........(((((....))))).(((.((........)))))..............)))))). ( -31.30) >consensus ACCGAGGUGGUUACCAUUCCAGCUCCUCUUCGUCUCAAAGGGGCACAACAACUGGGGCUGCCACUGGCUGCCCCACCGCCACCACCACCUCCACCAGCAGAGGAAGAAGUCCCCGAGACU ...((((((((........(((((((...........................)))))))....((((.(.....).))))..))))))))................((((.....)))) (-22.83 = -22.95 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:22 2006