Locus 2100

Sequence ID X_DroMel_CAF1
Location 5,708,837 – 5,708,954
Length 117
Max. P 0.830342
window3418

overview

Window 8

Location 5,708,837 – 5,708,954
Length 117
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 97.18
Mean single sequence MFE -31.05
Consensus MFE -27.32
Energy contribution -27.85
Covariance contribution 0.53
Combinations/Pair 1.03
Mean z-score -1.58
Structure conservation index 0.88
SVM decision value 0.71
SVM RNA-class probability 0.830342
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5708837 117 + 22224390
ACAGCAUUAUGGGUAAAUUUGUUUGCCUUGUAAGCAUAUCCUUGGGCGCACAUCCGGCUGGGAAUAUGUCUACCAUCUGCCUAACAAGCCAAC---AACAGUUUAGUUUGCUCCAUUUCC
...(((..(((((((((....))))))..(((..(((((.((..(.((......)).)..)).)))))..)))))).)))....(((((.(((---....)))..))))).......... ( -25.90)
>DroSec_CAF1 36989 117 + 1
ACAGCAUUAUGGGUAAAUUUGUUUGCCUUGUAAGCAUAUCCUUGGGCGAACAUCCGGCUGGGGAUAUGUCUACCAUCUGCCUAACAAGCCAAC---AACAGUUUAGUUUGCUCCAUUUCC
...(((..(((((((((....))))))..(((..((((((((..(.((......)).)..))))))))..)))))).)))....(((((.(((---....)))..))))).......... ( -33.50)
>DroSim_CAF1 34596 117 + 1
ACAGCAUUAUGGGUAAAUUUGUUUGCCUUGUAAGCAUAUCCUUGGGCGCACAUCCGGCUGGGGAUAUGUCUACCAUCUGCCUAACAAGCCAAC---AACAGUUUAGUUUGCUCCAUUUCC
...(((..(((((((((....))))))..(((..((((((((..(.((......)).)..))))))))..)))))).)))....(((((.(((---....)))..))))).......... ( -32.70)
>DroEre_CAF1 27823 117 + 1
ACAGCAUUAUGGGUAAAUUUGUUUGCCUUGUAAGCAUAUCCUUGGGCGCACAUCCGGCUGGGGAUAUGUCUACCAUCUGCCUAACAAGCCAAC---AACAGUUUAGUUUGCUCCAUUUCC
...(((..(((((((((....))))))..(((..((((((((..(.((......)).)..))))))))..)))))).)))....(((((.(((---....)))..))))).......... ( -32.70)
>DroYak_CAF1 29272 117 + 1
ACAGCAUUAUGGGUAAAUUUGUUUGCCUUGUAAGCAUAUCCUUGGGCGCACAUCCGGCUGGGGAUAUGUCUACCAUCUGCCUAACAAGCCAAC---AACAGUUUAGUUUGCUCCAUUUCC
...(((..(((((((((....))))))..(((..((((((((..(.((......)).)..))))))))..)))))).)))....(((((.(((---....)))..))))).......... ( -32.70)
>DroAna_CAF1 24171 119 + 1
ACAGCAUUAUGGGUAAAUUUGUUUGCCUUGUAAGCAUAUCCUUG-GCGCACAUCCGGCCGGAGAUAUGUCUACCAUCUGCCUAACAAGCCAACAACAACAGUUUAGUUUGCCCCACUUCC
..........(((((((((((((.((...(((..((((((..((-((.(......)))))..))))))..))).....))..)))))......(((....)))..))))))))....... ( -28.80)
>consensus
ACAGCAUUAUGGGUAAAUUUGUUUGCCUUGUAAGCAUAUCCUUGGGCGCACAUCCGGCUGGGGAUAUGUCUACCAUCUGCCUAACAAGCCAAC___AACAGUUUAGUUUGCUCCAUUUCC
........(((((((((((...(((....(((..(((((((((((.((......)).)))))))))))..))).....((.......)).........)))...))))))).)))).... (-27.32 = -27.85 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:17 2006