Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,704,488 – 5,704,586 |
Length | 98 |
Max. P | 0.691416 |
Location | 5,704,488 – 5,704,586 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 97.96 |
Mean single sequence MFE | -18.50 |
Consensus MFE | -17.77 |
Energy contribution | -18.10 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.70 |
Structure conservation index | 0.96 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691416 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5704488 98 + 22224390 GAUGGGAAAUGUAGGAAAAUGGUAGGAAAACAGUCGAAUAAAUGGCUGGAAAGAGGAGACGUGGUCAUAAUGACAAUGCCACUGGAACAGAGAAACCA ..(((..............(((((......((((((......))))))......(....)...(((.....)))..)))))(((...))).....))) ( -17.30) >DroSec_CAF1 25581 98 + 1 GAUGGGAAAUGUGGGAAAAUGGUAGGAAAACAGUCGAAUAAAUGGCUGGGAAGAGGAGACGUGGUCAUAAUGACAAUGCCACUGGUACAGAGAAACCA ..(((....(.((......(((((......((((((......))))))......(....)...(((.....)))..)))))......)).)....))) ( -19.10) >DroSim_CAF1 30379 98 + 1 GAUGGGAAAUGUGGGAAAAUGGUAGGAAAACAGUCGAAUAAAUGGCUGGGAAGAGGAGACGUGGUCAUAAUGACAAUGCCACUGGAACAGAGAAACCA ..(((....(.((......(((((......((((((......))))))......(....)...(((.....)))..)))))......)).)....))) ( -19.10) >consensus GAUGGGAAAUGUGGGAAAAUGGUAGGAAAACAGUCGAAUAAAUGGCUGGGAAGAGGAGACGUGGUCAUAAUGACAAUGCCACUGGAACAGAGAAACCA ..(((....(.((......(((((......((((((......))))))......(....)...(((.....)))..)))))......)).)....))) (-17.77 = -18.10 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:11 2006