Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,703,466 – 5,703,560 |
Length | 94 |
Max. P | 0.861681 |
Location | 5,703,466 – 5,703,560 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 70.62 |
Mean single sequence MFE | -25.52 |
Consensus MFE | -9.84 |
Energy contribution | -11.02 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.16 |
Mean z-score | -2.68 |
Structure conservation index | 0.39 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861681 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5703466 94 - 22224390 UAUGCAACAUGCGUUCGACAAUCAAGCGGC-UGCAAGUCAAAAGUCGAAACUUUAUUUGC---AGCUGCACACAGAGAAAA---------------------CCACAGACGAAAAAAAA- ..(((.....)))((((........(((((-(((((((..(((((....)))))))))))---)))))).......(....---------------------.).....))))......- ( -24.10) >DroSec_CAF1 24673 101 - 1 UAUGCAACAUGCGUUCGACAAUCAAGCGGC-UGCAAGUCAAAAGUCGAAACUUUAUUUGC---AGCUGCACACAGAGAAAAC------C------U---CAACCACAGACGCAAAAAAAA .........(((((..(........(((((-(((((((..(((((....)))))))))))---)))))).....(((.....------)------)---).....)..)))))....... ( -32.10) >DroEre_CAF1 22685 95 - 1 UAUGCAACAUGCGUUCGACAAUCAAGCGGC-GGCAAGUCAAAAGUCAGAACUUUAUUUGC---AGCUGCAC--AGAGGAAAC------C------U---CAACCACAGAGAGAGAA---- .((((.....))))((.....((..(((((-.((((((..(((((....)))))))))))---.)))))..--.((((...)------)------)---).......))....)).---- ( -24.50) >DroAna_CAF1 19162 115 - 1 UAUGCAACAUGCAUUCGACAAUCAGGCGGAAGGCGGGUCAAAGGGC-AAACUGUAUAUUCCACAAAAGGAC--AAAGGAAAAGGACACCGAAUUCUUAGUACCCUCGGAACUAGAAUG-- ((((((...(((.((.(((.....(.(....).)..))).))..))-)...))))))((((......((((--.(((((...((...))...))))).)).))...))))........-- ( -21.40) >consensus UAUGCAACAUGCGUUCGACAAUCAAGCGGC_GGCAAGUCAAAAGUCGAAACUUUAUUUGC___AGCUGCAC__AGAGAAAAC______C______U___CAACCACAGACGAAAAAAA__ .((((.....))))...........(((((..((((((..((((......))))))))))....)))))................................................... ( -9.84 = -11.02 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:10 2006