Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,702,178 – 5,702,298 |
Length | 120 |
Max. P | 0.872457 |
Location | 5,702,178 – 5,702,298 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.13 |
Mean single sequence MFE | -23.17 |
Consensus MFE | -17.82 |
Energy contribution | -17.60 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -2.69 |
Structure conservation index | 0.77 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.872457 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5702178 120 - 22224390 CUCACAUCUCCUGCUGGGCAAACAAUUUGCGUAAAAUUGUUUUUUUAUGCAUCAUCAAGUUGAAUUUUCACAGCUUUCACAGCUUUUCCACUUUCCCUUCGCUGUUAGUACAAUGCAGCC ............((((...........(((((((((......))))))))).....((((((........))))))...)))).................(((((.........))))). ( -23.50) >DroSec_CAF1 23410 102 - 1 CUC----CUGCUGCUGGGCAAACAAUUUGCGUAAAAUUGUUUUUUUAUGCAUCAUCAAGUUGAAUUUUCACAGCUUUCGCAGCUUUCCCACUUUCCCUUCG--------------CAGCC ...----..(((((.(((.(((.....(((((((((......))))))))).....((((((........))))))...............))))))...)--------------)))). ( -24.20) >DroSim_CAF1 26714 102 - 1 CUC----CUGCUGCUGGACAAACAAUUUGCGUAAAAUUGUUUUUUUAUGCAUCAUCAAGUUGAAUUUUCACAGCUUUCACAGCUUUCCCACUUUCCCUUCG--------------CAGCC ...----..(((((.((..........(((((((((......))))))))).....((((((........))))))...................))...)--------------)))). ( -21.80) >consensus CUC____CUGCUGCUGGGCAAACAAUUUGCGUAAAAUUGUUUUUUUAUGCAUCAUCAAGUUGAAUUUUCACAGCUUUCACAGCUUUCCCACUUUCCCUUCG______________CAGCC ............((((((.........(((((((((......))))))))).....((((((........)))))))).))))..................................... (-17.82 = -17.60 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:09 2006