Locus 2090

Sequence ID X_DroMel_CAF1
Location 5,694,056 – 5,694,164
Length 108
Max. P 0.609560
window3398

overview

Window 8

Location 5,694,056 – 5,694,164
Length 108
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 72.56
Mean single sequence MFE -25.65
Consensus MFE -14.05
Energy contribution -14.37
Covariance contribution 0.32
Combinations/Pair 1.20
Mean z-score -1.62
Structure conservation index 0.55
SVM decision value 0.15
SVM RNA-class probability 0.609560
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5694056 108 - 22224390
UUUCACUUUGCGCCAGGGGCAUUCAAUUAAGCGGCUCGUUG---GGCCCGUGCCCCAUUACCCUUGGCC---CCCUCCGC--CCCGCUCAAAUCCCCUUACCCCCCCACCCCCCC----U
......((((.((..(((((.........((((...))))(---((((.(((......)))....))))---).....))--))))).)))).......................----. ( -24.50)
>DroSec_CAF1 14811 105 - 1
UUUCACUUUGCGCCAGGGGCAUUCAAUUAAGCGGCUCGUUG---GGC-CGUGCCCCAUUACCCCUGGCCCC-CCCUCCUCC-CCUGCUGAAAUCCCCUUCCCCCUCC---CC-CC-----
...........((((((((...........((((((.....---)))-))).........))))))))...-.........-.........................---..-..----- ( -27.85)
>DroSim_CAF1 17840 107 - 1
UUUCACUUUGCGCCAGGGGCAUUCAAUUAAGCGGCUCGUUG---GGCCCGUGCCCCAUUACCCUUGGCCAC-CCCUCCUCCUCCUGCUGGAGUCCCCCUCCCCCUCC---CC-CC-----
........((.((((((((..........((((...))))(---(((....)))).....)))))))))).-........((((....))))...............---..-..----- ( -27.60)
>DroYak_CAF1 17578 105 - 1
UUGCACUCUUCGCCAGGGGCAUUCAAUUAGGCGGCUCGUUG---GGCCCGUGCCCCAUUACCCACGCUCCACCCCCCCGU--CCCGCUCAAACCCCACCCCCCAUC----AG-CC-----
...............((((..........(((((..((..(---((..((((..........))))......)))..)).--.)))))...........))))...----..-..----- ( -22.20)
>DroAna_CAF1 11872 100 - 1
UUUCACUUUUCGCCAAGGGCAUUCAAUUAAGCGGCUCGCUGCUCGCCCCCUGCCCCGC--CCACUGGCCGC-CCAU------U------ACACCCGACCCCCAGCC----AA-CCCUGGG
...........((((.((((.........(((((....))))).((.....))...))--))..))))...-....------.------..........(((((..----..-..))))) ( -26.10)
>consensus
UUUCACUUUGCGCCAGGGGCAUUCAAUUAAGCGGCUCGUUG___GGCCCGUGCCCCAUUACCCCUGGCCCC_CCCUCCGC__CCCGCUCAAAUCCCCCUCCCCCUCC___CC_CC_____
...........(((((((((((.......((((...)))).........)))))))........)))).................................................... (-14.05 = -14.37 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:59 2006