Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 747,835 – 747,925 |
Length | 90 |
Max. P | 0.717126 |
Location | 747,835 – 747,925 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 74.93 |
Mean single sequence MFE | -31.41 |
Consensus MFE | -17.42 |
Energy contribution | -18.59 |
Covariance contribution | 1.17 |
Combinations/Pair | 1.08 |
Mean z-score | -1.93 |
Structure conservation index | 0.55 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.717126 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 747835 90 - 22224390 ACAG-------------UGGAAGUGGUUCAA----------GUCAGUCACUCG-----AUCGCAUUAAGUGGCUAUAUCCCACUUCCGCAUUUGUGGCUUUCUCUGCUCACUUGGCUA ...(-------------(((((((((.....----------...(((((((..-----((...))..))))))).....))))))))))....(((((.......)).)))....... ( -29.52) >DroSec_CAF1 62888 112 - 1 GCAGCGAGAACUUGAUUUGGAAGUGGUUCAAGGC-CUUUCAGUCAGUCACUCG-----AUCGCAUUAAGUGGCUAUAUCCCACUUCCGCAUUUGUGGCUUUCUCUGCUCACUUUGCUA ((((.((((.((.(((.(((((((((.....(((-......)))(((((((..-----((...))..))))))).....))))))))).)))...)).)))).))))........... ( -36.00) >DroYak_CAF1 65790 115 - 1 GAAGCGAAAACUUGAUUUGGAAGCGGUUCAAGAUCCUUUC---UACUUACUCCGUCGCGUCGCUUUAAGUGGCUAUAUCCCAGUGCCGCAUUUGUGGCUUUCUCUGCUCACUUGGCUA ((.((((...........(((((.((((...)))))))))---...........)))).))(((..(((((((...........(((((....))))).......)).)))))))).. ( -28.72) >consensus GCAGCGA_AACUUGAUUUGGAAGUGGUUCAAG___CUUUC_GUCAGUCACUCG_____AUCGCAUUAAGUGGCUAUAUCCCACUUCCGCAUUUGUGGCUUUCUCUGCUCACUUGGCUA ..................((((((((.....((.....))....(((((((................))))))).....))))))))((....(((((.......)).)))...)).. (-17.42 = -18.59 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:03 2006