Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,693,729 – 5,693,820 |
Length | 91 |
Max. P | 0.999599 |
Location | 5,693,729 – 5,693,820 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 76.80 |
Mean single sequence MFE | -42.20 |
Consensus MFE | -29.36 |
Energy contribution | -31.05 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.14 |
Mean z-score | -2.93 |
Structure conservation index | 0.70 |
SVM decision value | 3.77 |
SVM RNA-class probability | 0.999599 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5693729 91 - 22224390 -UCACCUCGGUUAGCUGGACGCGAGAUGGCCAUAUAACUGGCCA---------------------CUGGCCACUGG-CCACUGGAUUGUGGUCAACCGUUGGCCGGCUGAUUGG -......(((((((((((.(((.((.((((((......))))))---------------------)).))...(((-((((......))))))).......)))))))))))). ( -41.80) >DroSec_CAF1 14492 90 - 1 -UCACCUCGGUUAGCUGGACGCGAGAUGGCCAUAUAA-UGGUCA---------------------CUGUCCACUGG-CCACUGGAUUGUGGUCAGCCGCUGGCCGGCUGAUUGG -(((.(.(((((((((((((...((.(((((((...)-))))))---------------------)))))))((((-((((......))))))))..))))))))).))).... ( -41.70) >DroSim_CAF1 17519 91 - 1 -UCACCUCGGUUAGCUGGUCGCGAGAUGGCCAUAUAA-UGGUCA---------------------CUGUCCACUGGACCACUGGAUUGUGGUCAGCCGCUGGCCGGCUGAUUGG -......((((((((((((((((((.(((((((...)-))))))---------------------))........((((((......))))))...))).))))))))))))). ( -42.50) >DroYak_CAF1 17191 107 - 1 AUUGCG---G--CGCGAGUUGCGAAAGGGCCAUAUAA-UGGUCACUAUGCCCAGUUCAAUGGCUACUGCUCACUGG-CCACCGGAUUGUGGUCAGCUGUUGGCCGGCUGAUUGG .(((((---(--(....))))))).((((((((...)-))))).))....((((((...((((((..((...((((-((((......))))))))..))))))))...)))))) ( -42.80) >consensus _UCACCUCGGUUAGCUGGACGCGAGAUGGCCAUAUAA_UGGUCA_____________________CUGUCCACUGG_CCACUGGAUUGUGGUCAGCCGCUGGCCGGCUGAUUGG .......((((((((((((((((....(((((......))))).............................((((.((((......)))))))).))).))))))))))))). (-29.36 = -31.05 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:58 2006