Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,691,767 – 5,691,873 |
Length | 106 |
Max. P | 0.999035 |
Location | 5,691,767 – 5,691,873 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 72.87 |
Mean single sequence MFE | -25.32 |
Consensus MFE | -17.56 |
Energy contribution | -16.84 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.35 |
Mean z-score | -2.63 |
Structure conservation index | 0.69 |
SVM decision value | 3.34 |
SVM RNA-class probability | 0.999035 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5691767 106 - 22224390 UGAUUAUAGC--UGAAAAUAAAUAUUUCACUAUAUUCGUUUAAUUGCAUUUCCAAAUGCAACAUUGCGUAUGAGUAAUGUGCAUCUGGGAAAAUUUAACA-------GCGGGCUU .((.(((((.--(((((.......)))))))))).))(((.((((...((((((.(((((.((((((......))))))))))).)))))))))).))).-------........ ( -28.70) >DroSec_CAF1 12812 106 - 1 UGAAUAUAGC--UCAAAAUAAAAAAUUCACCAUGCUCGUUUAAUUGCAUUUCCAAAUGCAACAUUGCGUAUGAGUAAUGUGCAUAUGGGAACAUUUAACA-------GCGGGUUU ..........--................(((.((((.(((....((..((((((.(((((.((((((......))))))))))).))))))))...))))-------)))))).. ( -27.00) >DroSim_CAF1 15610 106 - 1 UGAAUAUAGC--UCAAAAUAAAAAAAUCACCAUGCUCGUUUAAUUGCAUUUCCAAAUGCAACAUUGCGUAUGAGCAAUGUGCAUAUGGGAACAUUUAACA-------GCGGGUAU ..........--...................((((((((((((.((..((((((.(((((.((((((......))))))))))).)))))))).))))..-------)))))))) ( -30.70) >DroEre_CAF1 12197 91 - 1 UGAA-AUAGC--UCAAAGUAAAUAUUUGACCAU----GUUUAAUUGAAUUUCUAAGCGCAACAGUGCGUAUGAGUAAUGUGUGCAUAUGAU------GCA-----------UAUU ....-...((--(((...(((((((......))----))))).............(((((....))))).)))))...((((((((...))------)))-----------))). ( -19.10) >DroYak_CAF1 13041 104 - 1 UGAA-AUAAUAGUGAAACACAAUGUUUG----------GUUAAUUGAAUUUCUAAGUGCAACAUUGCGUAUGAGUAAUGUACACAUGGGAACAUUUAACAUUUAGCAAUCGGCUU .((.-......(((...)))..((((..----------(((((.((..((((((.(((..(((((((......))))))).))).)))))))).)))))....)))).))..... ( -21.10) >consensus UGAAUAUAGC__UCAAAAUAAAUAUUUCACCAU__UCGUUUAAUUGCAUUUCCAAAUGCAACAUUGCGUAUGAGUAAUGUGCAUAUGGGAACAUUUAACA_______GCGGGCUU ................................................((((((.(((((.((((((......))))))))))).))))))........................ (-17.56 = -16.84 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:55 2006