Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,691,003 – 5,691,116 |
Length | 113 |
Max. P | 0.998006 |
Location | 5,691,003 – 5,691,116 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 91.06 |
Mean single sequence MFE | -38.16 |
Consensus MFE | -32.00 |
Energy contribution | -32.76 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.09 |
Mean z-score | -1.70 |
Structure conservation index | 0.84 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913475 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5691003 113 + 22224390 AGAACUCGACCAGCAAACGAAUGGCCAUCGUCUGUCUGCAGCCGGAGCAUCUCGUGAAUUCCACCUGUAAGUCAUCGAUGGACAAGUGCAUUCCGCGGCUGGACAAGUUCAUA .(((((.(.(((((....(((((.((((((..((.((((((..((((..((....)).))))..)))).)).)).)))))).......)))))....))))).).)))))... ( -37.20) >DroSec_CAF1 11257 113 + 1 AGAACUCGACCAGCAAACGAAUGGCCAUCAUCUGCCUGCAGCCGGAGCAUCUGGUGAAAUCCAUCUGCAAGUCAUCGAUGGAUAAGUGCAUUCCGCGACUGGACAAGUUCAUA .(((((.(.((((.....(((((..(((((..((((((....))).)))..)))))..(((((((...........))))))).....))))).....)))).).)))))... ( -33.60) >DroSim_CAF1 12236 113 + 1 AGAACUCGACCAGCAAACGGAUGGCCAUCGUCUGUCUGCAGCCGGAGCAUCUGGUGAAAUCCAUCUGCAAGUCAUCGAUGGACAAGUGCAUUCCGCGGCUGGACAAGUUCAUG .(((((.(.(((((...((((((.((((((..((.((((((..(((...((....))..)))..)))).)).)).)))))).)).......))))..))))).).)))))... ( -41.51) >DroEre_CAF1 10837 113 + 1 AGAAUUCGACCAGCAAGCGCAUGGCCAUCGCCUGUGUGCAGCCGGAGCAUCUGGUGAGAUCCACAUGCAAGUCAUCGAUGGACAAGUGCAUUCCCAGGCUGGACAAGUUCAUG .(((((.(.(((((..(((((((((....))).))))))....(((((((.(((......))).))))..(((.......)))........)))...))))).).)))))... ( -38.60) >DroYak_CAF1 12472 113 + 1 AGAACUCGACCAGCAAACGAAUGGCCAUCGCCUGUGUGCAGCCGGAGCAUCUGGUGCGUUCCACAUGCAAGUCAUCGAUGGACAAGUGCAUUCCCAUGCUGGACAAGUUCAUG .(((((.(.((((((...(((((.(((((((.((((((((.((((.....))))))))...)))).))..(....)))))).......)))))...)))))).).)))))... ( -39.90) >consensus AGAACUCGACCAGCAAACGAAUGGCCAUCGUCUGUCUGCAGCCGGAGCAUCUGGUGAAAUCCACCUGCAAGUCAUCGAUGGACAAGUGCAUUCCGCGGCUGGACAAGUUCAUG .(((((.(.(((((....(((((.((((((......(((((..(((...((....))..)))..)))))......)))))).......)))))....))))).).)))))... (-32.00 = -32.76 + 0.76)
Location | 5,691,003 – 5,691,116 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 91.06 |
Mean single sequence MFE | -43.28 |
Consensus MFE | -36.62 |
Energy contribution | -37.70 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.05 |
Mean z-score | -2.56 |
Structure conservation index | 0.85 |
SVM decision value | 2.98 |
SVM RNA-class probability | 0.998006 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5691003 113 - 22224390 UAUGAACUUGUCCAGCCGCGGAAUGCACUUGUCCAUCGAUGACUUACAGGUGGAAUUCACGAGAUGCUCCGGCUGCAGACAGACGAUGGCCAUUCGUUUGCUGGUCGAGUUCU ...(((((((.(((((.((((...(((((((((((((...........)))))).....)))).))).....))))....((((((.......))))))))))).))))))). ( -41.80) >DroSec_CAF1 11257 113 - 1 UAUGAACUUGUCCAGUCGCGGAAUGCACUUAUCCAUCGAUGACUUGCAGAUGGAUUUCACCAGAUGCUCCGGCUGCAGGCAGAUGAUGGCCAUUCGUUUGCUGGUCGAGUUCU ...(((((((.(((((.(((.((((.......((((((.((.(((((((.((((..((....))...)))).)))))))))..)))))).)))))))..))))).))))))). ( -44.00) >DroSim_CAF1 12236 113 - 1 CAUGAACUUGUCCAGCCGCGGAAUGCACUUGUCCAUCGAUGACUUGCAGAUGGAUUUCACCAGAUGCUCCGGCUGCAGACAGACGAUGGCCAUCCGUUUGCUGGUCGAGUUCU ...(((((((.(((((.(((((.......((.((((((.((..((((((.((((..((....))...)))).)))))).))..)))))).)))))))..))))).))))))). ( -47.01) >DroEre_CAF1 10837 113 - 1 CAUGAACUUGUCCAGCCUGGGAAUGCACUUGUCCAUCGAUGACUUGCAUGUGGAUCUCACCAGAUGCUCCGGCUGCACACAGGCGAUGGCCAUGCGCUUGCUGGUCGAAUUCU ...(((.(((.(((((..(((...(((..((.(((((........((((.(((......))).))))...(.(((....))).)))))).))))).)))))))).))).))). ( -37.60) >DroYak_CAF1 12472 113 - 1 CAUGAACUUGUCCAGCAUGGGAAUGCACUUGUCCAUCGAUGACUUGCAUGUGGAACGCACCAGAUGCUCCGGCUGCACACAGGCGAUGGCCAUUCGUUUGCUGGUCGAGUUCU ...(((((((.((((((.(.(((((.....(.(((((........((((.(((......))).))))...(.(((....))).)))))))))))).).)))))).))))))). ( -46.00) >consensus CAUGAACUUGUCCAGCCGCGGAAUGCACUUGUCCAUCGAUGACUUGCAGGUGGAUUUCACCAGAUGCUCCGGCUGCAGACAGACGAUGGCCAUUCGUUUGCUGGUCGAGUUCU ...(((((((.(((((....(((((....((.((((((.((...(((((.((((..((....))...)))).)))))..))..)))))).))..)))))))))).))))))). (-36.62 = -37.70 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:54 2006