Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,677,315 – 5,677,474 |
Length | 159 |
Max. P | 0.992286 |
Location | 5,677,315 – 5,677,434 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.75 |
Mean single sequence MFE | -39.20 |
Consensus MFE | -30.91 |
Energy contribution | -30.03 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.19 |
Mean z-score | -2.06 |
Structure conservation index | 0.79 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.726663 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5677315 119 - 22224390 CAGCGCAUACAGUUAGUAUGCGAACUUCCAAU-CGGGAGGUAGUGCCGCCGGUCCGGGUUCGAAUCCCGGUGAAGUUAUCAAAAGUAGCAAUGGAAAAUAUAUGAUGAUGGUGCACUUCC ...(((((((.....))))))).((((((...-..))))))(((((.(((...(((((.......)))))....(((((((...(((...........))).)))))))))))))))... ( -38.20) >DroSec_CAF1 16218 118 - 1 CAGCGCAUACAGCUAGUAUGCGAACUCCCGAU-UCGGGUGUGGUGCCGCCGGUCCGGGUUCGAAUCCCGGUGAAGUUAAUAAAAGUAGCAACGGAAAAUGU-UACUAAUGUUAAACUUUA ...(((((((.....))))))).(((...(((-(((..(.(((.(((...)))))).)..))))))..)))((((((((((..(((((((........)))-))))..)))).)))))). ( -38.00) >DroSim_CAF1 17224 118 - 1 CAGCGCAUACAGCUAGUAUGCGAACUCCCGAUCUCGGGUGUGGUGCCGCCGGUCCGGGUUCGAAUCCCGGUGAAGUUAAUAAAAGUAGCAACGGAAAUUGU-UACAAACGUUA-ACUUUA ...(((((((.....))))))).((.((((....)))).))((.....))...(((((.......)))))((((((((((....(((((((......))))-)))....))))-)))))) ( -41.40) >consensus CAGCGCAUACAGCUAGUAUGCGAACUCCCGAU_UCGGGUGUGGUGCCGCCGGUCCGGGUUCGAAUCCCGGUGAAGUUAAUAAAAGUAGCAACGGAAAAUGU_UACUAAUGUUA_ACUUUA ..((((((((.....))))))..((.((((....)))).))......))....(((((.......))))).((((((((((..((((...(((.....))).))))..))))).))))). (-30.91 = -30.03 + -0.88)
Location | 5,677,355 – 5,677,474 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.42 |
Mean single sequence MFE | -54.77 |
Consensus MFE | -51.48 |
Energy contribution | -51.93 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.09 |
Mean z-score | -3.48 |
Structure conservation index | 0.94 |
SVM decision value | 2.32 |
SVM RNA-class probability | 0.992286 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5677355 119 + 22224390 GAUAACUUCACCGGGAUUCGAACCCGGACCGGCGGCACUACCUCCCG-AUUGGAAGUUCGCAUACUAACUGUAUGCGCUGCCGCCGGCGGCGAGGGGUCAGCUCCCAGGGGAUAAACUAG (((..((((.(((((.......))))).(((((((((((.((.....-...)).))).(((((((.....)))))))..))))))))....)))).)))...(((....)))........ ( -49.50) >DroSec_CAF1 16257 119 + 1 AUUAACUUCACCGGGAUUCGAACCCGGACCGGCGGCACCACACCCGA-AUCGGGAGUUCGCAUACUAGCUGUAUGCGCUGCCGCCGGCGGCGAGGGGACUCGCUCCAAAGGAUAAACUAG ..........(((((.......))))).(((((((((..((.((((.-..)))).)).(((((((.....))))))).)))))))((.((((((....))))))))...))......... ( -56.30) >DroSim_CAF1 17262 120 + 1 AUUAACUUCACCGGGAUUCGAACCCGGACCGGCGGCACCACACCCGAGAUCGGGAGUUCGCAUACUAGCUGUAUGCGCUGCCGCCGGCGGCGAGGGGACUCGCUCCAAAGGAUAAACUAG ..........(((((.......))))).(((((((((..((.((((....)))).)).(((((((.....))))))).)))))))((.((((((....))))))))...))......... ( -58.50) >consensus AUUAACUUCACCGGGAUUCGAACCCGGACCGGCGGCACCACACCCGA_AUCGGGAGUUCGCAUACUAGCUGUAUGCGCUGCCGCCGGCGGCGAGGGGACUCGCUCCAAAGGAUAAACUAG ..........(((((.......))))).(((((((((..((.((((....)))).)).(((((((.....))))))).)))))))((.((((((....))))))))...))......... (-51.48 = -51.93 + 0.45)
Location | 5,677,355 – 5,677,474 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.42 |
Mean single sequence MFE | -55.63 |
Consensus MFE | -50.60 |
Energy contribution | -50.27 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.06 |
Mean z-score | -3.03 |
Structure conservation index | 0.91 |
SVM decision value | 1.90 |
SVM RNA-class probability | 0.982044 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5677355 119 - 22224390 CUAGUUUAUCCCCUGGGAGCUGACCCCUCGCCGCCGGCGGCAGCGCAUACAGUUAGUAUGCGAACUUCCAAU-CGGGAGGUAGUGCCGCCGGUCCGGGUUCGAAUCCCGGUGAAGUUAUC ...(((..(((....)))...)))...(((((((((((((((.(((((((.....))))))).((((((...-..))))))..))))))))))..(((.......))))))))....... ( -55.70) >DroSec_CAF1 16257 119 - 1 CUAGUUUAUCCUUUGGAGCGAGUCCCCUCGCCGCCGGCGGCAGCGCAUACAGCUAGUAUGCGAACUCCCGAU-UCGGGUGUGGUGCCGCCGGUCCGGGUUCGAAUCCCGGUGAAGUUAAU ..........((((.(.(((((....))))))((((((((((.(((((((.....))))))..((.((((..-.)))).))).))))))))))(((((.......))))).))))..... ( -54.50) >DroSim_CAF1 17262 120 - 1 CUAGUUUAUCCUUUGGAGCGAGUCCCCUCGCCGCCGGCGGCAGCGCAUACAGCUAGUAUGCGAACUCCCGAUCUCGGGUGUGGUGCCGCCGGUCCGGGUUCGAAUCCCGGUGAAGUUAAU ..........((((.(.(((((....))))))((((((((((.(((((((.....))))))..((.((((....)))).))).))))))))))(((((.......))))).))))..... ( -56.70) >consensus CUAGUUUAUCCUUUGGAGCGAGUCCCCUCGCCGCCGGCGGCAGCGCAUACAGCUAGUAUGCGAACUCCCGAU_UCGGGUGUGGUGCCGCCGGUCCGGGUUCGAAUCCCGGUGAAGUUAAU ((((........))))...........(((((((((((((((.(((((((.....))))))).((.((((....)))).))..))))))))))..(((.......))))))))....... (-50.60 = -50.27 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:50 2006