Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,675,890 – 5,676,024 |
Length | 134 |
Max. P | 0.925891 |
Location | 5,675,890 – 5,675,985 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 95.09 |
Mean single sequence MFE | -20.70 |
Consensus MFE | -18.99 |
Energy contribution | -18.77 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.45 |
Structure conservation index | 0.92 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.925891 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5675890 95 + 22224390 GAAAAGUACAUGUAGCAGGAAGUUAAUAAAUAAAAGUUAACUUCUUAAAGUUGCCUAAAGCAGUGCAUAACUUUUGGAUAUAUAUUAUGGCGUAA .((((((..(((((..(((((((((((........)))))))))))....((((.....))))))))).)))))).................... ( -18.50) >DroSec_CAF1 14844 95 + 1 GAAAAGUACAUGUAGCAGGAAGUUAAUAAAUAAAAGUUAACUUCUUAAAGCUGCCCAAAGCUGUGCAUAACUUUUUGGAAUAUAUAAUGGCGUAA ......(((..((((((((((((((((........)))))))))))...)))))((((((..((.....)).)))))).............))). ( -22.30) >DroSim_CAF1 15412 95 + 1 GAAAAGUACAUGUAGCAGGAAGUUAAUAAAUAAAAGUUAACUUCUUAAAGCUGCCCAAAGCUGUGCAUAACUUUUGGGAAUAUAUAAUGGCGUAA ......(((..((((((((((((((((........)))))))))))...)))))((((((..((.....))))))))..............))). ( -21.30) >consensus GAAAAGUACAUGUAGCAGGAAGUUAAUAAAUAAAAGUUAACUUCUUAAAGCUGCCCAAAGCUGUGCAUAACUUUUGGGAAUAUAUAAUGGCGUAA .((((((..(((((..(((((((((((........)))))))))))...(((......)))..))))).)))))).................... (-18.99 = -18.77 + -0.22)
Location | 5,675,905 – 5,676,024 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.89 |
Mean single sequence MFE | -27.17 |
Consensus MFE | -23.22 |
Energy contribution | -23.33 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -2.27 |
Structure conservation index | 0.85 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.747836 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5675905 119 + 22224390 CAGGAAGUUAAUAAAUAAAAGUUAACUUCUUAAAGUUGCCUAAAGCAGUGCAUAACUUUUGGAUAUAUAUUAUGGCGUAAUUAUA-AUGUGCACAUAGCCCCACUUCGUAUGGCUCCAUA .(((((((((((........)))))))))))((((((((((.....)).)))..)))))((((..((((((((((.....)))))-)))))......(((..((...))..))))))).. ( -24.40) >DroSec_CAF1 14859 120 + 1 CAGGAAGUUAAUAAAUAAAAGUUAACUUCUUAAAGCUGCCCAAAGCUGUGCAUAACUUUUUGGAAUAUAUAAUGGCGUAAUUAUAUAAUUGCACAUAGCCCCACUUCGCAUGGCUCCAUA .(((((((((((........)))))))))))..((((......))))(((((...((....))..((((((((......))))))))..)))))..((((...........))))..... ( -27.90) >DroSim_CAF1 15427 120 + 1 CAGGAAGUUAAUAAAUAAAAGUUAACUUCUUAAAGCUGCCCAAAGCUGUGCAUAACUUUUGGGAAUAUAUAAUGGCGUAAUUAUAUAAUUGCACAUAGCCCCACUUCGCAUGGCUCCAUA .(((((((((((........)))))))))))............((((((((........((((..((((((((......))))))))...((.....))))))....))))))))..... ( -29.20) >consensus CAGGAAGUUAAUAAAUAAAAGUUAACUUCUUAAAGCUGCCCAAAGCUGUGCAUAACUUUUGGGAAUAUAUAAUGGCGUAAUUAUAUAAUUGCACAUAGCCCCACUUCGCAUGGCUCCAUA .(((((((((((........)))))))))))............((((((((...........((.((((((((......)))))))).))((.....))........))))))))..... (-23.22 = -23.33 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:46 2006