Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,674,916 – 5,675,032 |
Length | 116 |
Max. P | 0.527837 |
Location | 5,674,916 – 5,675,032 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 85.01 |
Mean single sequence MFE | -33.13 |
Consensus MFE | -21.70 |
Energy contribution | -22.07 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.18 |
Mean z-score | -2.06 |
Structure conservation index | 0.65 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527837 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5674916 116 - 22224390 UGUCCACGGUGCGUAUGAGCGAUGGCAGGCAAGUUUGCAAAAGCGGGCAUCUUUCGGAUGGUGGAAAGUGAAGACUUGCCGCGAUUGGUAAUCAAAGAAAAAGGCAGAAAAGCACA ........((((...(((.((((.((.(((((((((.((....(.(.((((.....)))).).)....)).))))))))))).))))....)))..(.......)......)))). ( -32.90) >DroSec_CAF1 13899 115 - 1 UGGCCACGGUGCGUAUGAGCUAUGGCAGGUAAGC-UGCAAAAGCGAGCGUCUUUCGGAUGCUGGAAAAUGCAGACUUGCCGCGAUUGGUAAUCAAAGAGAAAGGCAGAAAAGCACA ..((((..((........))..)))).(((((((-((((....(.((((((.....)))))).)....))))).))))))((.....((..((.....))...))......))... ( -38.80) >DroSim_CAF1 14439 100 - 1 UGGCCACGGUGCGUAUGAGCGAUGGCAGGUAAGC-UGCAAAAGCGGGC---------------GAAAAUGCAGACUUGCCGCGAUUGGUAAUCAAAGAGAAAGGCAGAAAAGUACA ..((((((...))).(((.((((.((.(((((((-((((....(....---------------)....))))).)))))))).))))....)))........)))........... ( -27.70) >consensus UGGCCACGGUGCGUAUGAGCGAUGGCAGGUAAGC_UGCAAAAGCGGGC_UCUUUCGGAUG_UGGAAAAUGCAGACUUGCCGCGAUUGGUAAUCAAAGAGAAAGGCAGAAAAGCACA ........((((......((....((.(((((((.((((....(.(.((((.....)))).).)....))))).))))))))(((.....)))..........))......)))). (-21.70 = -22.07 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:42 2006