Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,674,248 – 5,674,338 |
Length | 90 |
Max. P | 0.631009 |
Location | 5,674,248 – 5,674,338 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 77.21 |
Mean single sequence MFE | -33.07 |
Consensus MFE | -23.92 |
Energy contribution | -26.23 |
Covariance contribution | 2.31 |
Combinations/Pair | 1.12 |
Mean z-score | -1.37 |
Structure conservation index | 0.72 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.631009 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5674248 90 + 22224390 GCAGUAU-CAGUGGGCGGUGGGCGUUGGCCGAUGGGUGGUGGGCGUUGUGUUAUCCUUCGUCCUUCGUCCAUUGUUGG-CCACCAAAGGAGU .......-..((((((((((((((..((.(((.(((((..(.......)..))))).))).))..))))))))))...-))))......... ( -30.30) >DroSec_CAF1 13283 81 + 1 GAAGUGGGCGUUGGGCGGUGGGCGGUGGGCGGUG-GCGGUGGGCGUUGUGUUAUCCUU-------CGUCCAUUGUUGGACCGCCGAAGG--- ......((((((.((((((((((((.(((..(..-(((.....)))..)....))).)-------))))))))))).)).)))).....--- ( -33.00) >DroSim_CAF1 13769 81 + 1 GCAGUGGG-------CGGUGGGCGGUGGGCGGUG-AUGGUGGGCGUUGUGUUAUCCUUCGUCCUUCGUCCAUUGUUGGACCGCCAAAGG--- ......((-------((((.((((((((((((.(-((((.((..(......)..)).)))))..)))))))))))).).))))).....--- ( -35.90) >consensus GCAGUGGGC__UGGGCGGUGGGCGGUGGGCGGUG_GUGGUGGGCGUUGUGUUAUCCUUCGUCCUUCGUCCAUUGUUGGACCGCCAAAGG___ ................((((((((((((((((.((((((.((..(......)..)).)))))).)))))))))))....)))))........ (-23.92 = -26.23 + 2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:41 2006