Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,673,604 – 5,673,721 |
Length | 117 |
Max. P | 0.932299 |
Location | 5,673,604 – 5,673,721 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.40 |
Mean single sequence MFE | -32.57 |
Consensus MFE | -28.95 |
Energy contribution | -29.07 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.72 |
Structure conservation index | 0.89 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.932299 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5673604 117 + 22224390 ACGAUGUUAUCCUUGGGGCUGCAACC---GAAACACAUGUUGUUGUCCAUAUCCUUCUUGCCAUCUCCGUGGCGGCCCCAUUAACCCACAAAGCACACGACUCGUGGCCCAAAAAUCAUC ..(((((((....((((((((((((.---..(((....)))))))).............(((((....)))))))))))).)))).......((.((((...))))))......)))... ( -31.10) >DroSec_CAF1 12645 120 + 1 ACGAUGUUAUCCUUGGGGCUGCACCAACUCCAACACAUGUUGUUGUCCAUGUCCUUCUCGCCAUCUCCUUGGCGGCCCCAUUAACCCACAAAGCACACGACUCGUGGCCCAAAAAUCAUC ..(((((((....((((((.(((...((..((((....))))..))...)))......(((((......))))))))))).)))).......((.((((...))))))......)))... ( -33.00) >DroSim_CAF1 13133 117 + 1 ACGAUGUUAUCCUUGGGGCUGCACCC---GAAACACAUGUUGUUGUCCAUGUCCUUCUCGCCAUCUCCUUGGCGGCCCCAUUAACCCACAAAGCACACGACUCGUGGCCCAAAAAUCAUC ..(((((((....((((((.......---(((..(((((........)))))..))).(((((......))))))))))).)))).......((.((((...))))))......)))... ( -33.60) >consensus ACGAUGUUAUCCUUGGGGCUGCACCC___GAAACACAUGUUGUUGUCCAUGUCCUUCUCGCCAUCUCCUUGGCGGCCCCAUUAACCCACAAAGCACACGACUCGUGGCCCAAAAAUCAUC ..(((((((....((((((...............(((((........)))))......(((((......))))))))))).)))).......((.((((...))))))......)))... (-28.95 = -29.07 + 0.11)
Location | 5,673,604 – 5,673,721 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.40 |
Mean single sequence MFE | -43.23 |
Consensus MFE | -38.05 |
Energy contribution | -38.83 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.03 |
Mean z-score | -2.44 |
Structure conservation index | 0.88 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.866865 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5673604 117 - 22224390 GAUGAUUUUUGGGCCACGAGUCGUGUGCUUUGUGGGUUAAUGGGGCCGCCACGGAGAUGGCAAGAAGGAUAUGGACAACAACAUGUGUUUC---GGUUGCAGCCCCAAGGAUAACAUCGU ((((((((((((((((((((........))))))).....((.((((((((......))))..((((.(((((........))))).))))---)))).))..)))))))))..)))).. ( -41.80) >DroSec_CAF1 12645 120 - 1 GAUGAUUUUUGGGCCACGAGUCGUGUGCUUUGUGGGUUAAUGGGGCCGCCAAGGAGAUGGCGAGAAGGACAUGGACAACAACAUGUGUUGGAGUUGGUGCAGCCCCAAGGAUAACAUCGU ((((....((((.(((((((........))))))).))))(((((((((((......))))).....(.(((.(((..((((....))))..))).)))).)))))).......)))).. ( -43.90) >DroSim_CAF1 13133 117 - 1 GAUGAUUUUUGGGCCACGAGUCGUGUGCUUUGUGGGUUAAUGGGGCCGCCAAGGAGAUGGCGAGAAGGACAUGGACAACAACAUGUGUUUC---GGGUGCAGCCCCAAGGAUAACAUCGU ((((....((((.(((((((........))))))).))))(((((((((((......))))).((((.(((((........))))).))))---.......)))))).......)))).. ( -44.00) >consensus GAUGAUUUUUGGGCCACGAGUCGUGUGCUUUGUGGGUUAAUGGGGCCGCCAAGGAGAUGGCGAGAAGGACAUGGACAACAACAUGUGUUUC___GGGUGCAGCCCCAAGGAUAACAUCGU ((((....((((.(((((((........))))))).))))(((((((((((......))))).((((.(((((........))))).))))..........)))))).......)))).. (-38.05 = -38.83 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:41 2006