Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,672,936 – 5,673,054 |
Length | 118 |
Max. P | 0.866062 |
Location | 5,672,936 – 5,673,054 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.01 |
Mean single sequence MFE | -28.76 |
Consensus MFE | -24.90 |
Energy contribution | -25.35 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -2.16 |
Structure conservation index | 0.87 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.866062 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5672936 118 - 22224390 --AAAGUGCACUUGGCACUUGGAAUAAAUCAUUAAAAAUAAUAAAUCAUAAAAAUUCCAAAUCCGAUUUAUUUAAUCGCCAACUGCAUAUUUGGCAGUGUACUUCGCUUAGCUUGAGUGC --.(((((((((((((..(((((((............................)))))))....((((.....))))))))).(((.......)))))))))))(((((.....))))). ( -26.59) >DroSec_CAF1 11986 114 - 1 --ACAGUGCACUUGGCACUUGGAAUAAAUCAUUAAAAAUAAGUAAGUGGGUAAGU----AAUCGGAUUUAUUUAAUUGCUAAGUGCAUUUUUGGCAGUGUACUUCGCUUAGCUUGAGUGC --..(((((((((((((....(((((((((.(((....))).......(((....----.))).)))))))))...)))))))))))))((.(((((((.....))))..))).)).... ( -28.50) >DroSim_CAF1 12471 116 - 1 AAACAGUGCACUUGGCACUUGGAAUAAAUCAUUAAAAAUAAGUAAGUGGGUAAGU----AAUCGGAUUUAUUUAAUUGCUAAGUGCAUUUUUGGCAGUGUACUUCGCUUGGCGUGAGUGC ....(((((((((((((....(((((((((.(((....))).......(((....----.))).)))))))))...))))))))))))).........(((((((((...))).)))))) ( -31.20) >consensus __ACAGUGCACUUGGCACUUGGAAUAAAUCAUUAAAAAUAAGUAAGUGGGUAAGU____AAUCGGAUUUAUUUAAUUGCUAAGUGCAUUUUUGGCAGUGUACUUCGCUUAGCUUGAGUGC .....((((((((((((....(((((((((..................................)))))))))...)))))))))))).....((((((.....))))..))........ (-24.90 = -25.35 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:37 2006