Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,672,300 – 5,672,420 |
Length | 120 |
Max. P | 0.961609 |
Location | 5,672,300 – 5,672,420 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -31.67 |
Consensus MFE | -29.76 |
Energy contribution | -29.10 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.09 |
Mean z-score | -2.63 |
Structure conservation index | 0.94 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961609 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5672300 120 + 22224390 GCAAUGCAAUUUGCAAGCUGUUUUAAUAAUGCAACGAUCUGUAUUAUUCAGUGGCGACGCUUGAUAUUUAUUCAUGCCGCCUUGCAUUUAAGAUUCCUGCUGCCAGCACAUUUUGCAAAU ....(((((..(((((((((....(((((((((......)))))))))))))((((..((.(((.......))).)))))))))))...........(((.....)))....)))))... ( -29.70) >DroSec_CAF1 11327 120 + 1 ACAAUGCAGUUUGCAAGCUGUUUUAAUAAUACAACGAUCUGUAUUAUUCAGUGGCGACGCUUGAUAUUUAUUCAUGUCGCCUUGCAUUUAAGCUCCUUGCUGCCAGCACAUUUUGCAAAU ........((((((((((((....(((((((((......)))))))))))))(((((((..(((.......)))))))))).(((.....(((.....)))....)))....)))))))) ( -33.40) >DroSim_CAF1 11831 120 + 1 GCAAUGCAGUUUGCAAGCUGUUUUAAUAAUACAACGAUCUGUAUUAUUCAGUGGCGACGCUUGAUAUUUAUUCAUGCCGCCUUGCAUUUAAGCUCCUUGCUGCCAGCACAUUUUGCAAAU (((((((....(((((((((....(((((((((......)))))))))))))((((..((.(((.......))).)))))))))))....(((.....)))....)))....)))).... ( -31.90) >consensus GCAAUGCAGUUUGCAAGCUGUUUUAAUAAUACAACGAUCUGUAUUAUUCAGUGGCGACGCUUGAUAUUUAUUCAUGCCGCCUUGCAUUUAAGCUCCUUGCUGCCAGCACAUUUUGCAAAU ....(((((..(((((((((....(((((((((......)))))))))))))((((..((.(((.......))).)))))))))))...........(((.....)))....)))))... (-29.76 = -29.10 + -0.66)
Location | 5,672,300 – 5,672,420 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -31.37 |
Consensus MFE | -28.77 |
Energy contribution | -28.67 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -2.32 |
Structure conservation index | 0.92 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888794 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5672300 120 - 22224390 AUUUGCAAAAUGUGCUGGCAGCAGGAAUCUUAAAUGCAAGGCGGCAUGAAUAAAUAUCAAGCGUCGCCACUGAAUAAUACAGAUCGUUGCAUUAUUAAAACAGCUUGCAAAUUGCAUUGC ((((((((..(((.(((....)))........(((((((((((((.(((.......)))...)))))).(((.......)))....)))))))......)))..))))))))........ ( -29.70) >DroSec_CAF1 11327 120 - 1 AUUUGCAAAAUGUGCUGGCAGCAAGGAGCUUAAAUGCAAGGCGACAUGAAUAAAUAUCAAGCGUCGCCACUGAAUAAUACAGAUCGUUGUAUUAUUAAAACAGCUUGCAAACUGCAUUGU .(((((((.....((((.(((......((......))..((((((.(((.......)))...)))))).)))((((((((((....))))))))))....)))))))))))......... ( -32.50) >DroSim_CAF1 11831 120 - 1 AUUUGCAAAAUGUGCUGGCAGCAAGGAGCUUAAAUGCAAGGCGGCAUGAAUAAAUAUCAAGCGUCGCCACUGAAUAAUACAGAUCGUUGUAUUAUUAAAACAGCUUGCAAACUGCAUUGC .(((((((.....((((.(((......((......))..((((((.(((.......)))...)))))).)))((((((((((....))))))))))....)))))))))))......... ( -31.90) >consensus AUUUGCAAAAUGUGCUGGCAGCAAGGAGCUUAAAUGCAAGGCGGCAUGAAUAAAUAUCAAGCGUCGCCACUGAAUAAUACAGAUCGUUGUAUUAUUAAAACAGCUUGCAAACUGCAUUGC .(((((((.....(((((((..(((...)))...)))..((((((.(((.......)))...))))))....((((((((((....))))))))))....)))))))))))......... (-28.77 = -28.67 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:36 2006