Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,669,496 – 5,669,611 |
Length | 115 |
Max. P | 0.939478 |
Location | 5,669,496 – 5,669,611 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.09 |
Mean single sequence MFE | -30.40 |
Consensus MFE | -27.15 |
Energy contribution | -27.93 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.03 |
Mean z-score | -2.62 |
Structure conservation index | 0.89 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.939478 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5669496 115 + 22224390 ----GAGUUAUUUCGAAAUACUACUGAUUUAGCUGAAGAAAUUAUGCAGCG-UAGUUGUUAAAGCUGUGCUUUUCAACCUCCACUUUUAUGGCUGUGAAAUUUCUGCAGCUUAGUUACAG ----(((....)))..........(((((.(((((.(((((((.(((((((-..((((..(((((...))))).))))..)..(......))))))).))))))).))))).)))))... ( -29.40) >DroSec_CAF1 8529 114 + 1 ----AAGUUAUUUCGAAAUACUACUGAUUUAGCUGAAGAAAUUAUGCAGAGGAAGUUGUUAAAGCA--GCAUUUCAACCUCCACUUUUAUGGCUGUAAAAUUUCUGCAGCUUAGUUACAC ----....................(((((.(((((.(((((((.(((((.(((((((((....)))--)).)))).....(((......)))))))).))))))).))))).)))))... ( -29.40) >DroSim_CAF1 9330 118 + 1 UUUCGAGUUAUUUCGAAAUACUACUGAUUUAGCUGAAGAAAUUAUGCAGAGGAAGUUGUUAAAGCU--GCUUUUCAACCUCCACUUUUAUGGCUGUGAAAUUUCUGCAGCUUAGUUACAC (((((((....)))))))......(((((.(((((.(((((((.(((((.(((.((((..((((..--.)))).)))).))).(......).))))).))))))).))))).)))))... ( -32.40) >consensus ____GAGUUAUUUCGAAAUACUACUGAUUUAGCUGAAGAAAUUAUGCAGAGGAAGUUGUUAAAGCU__GCUUUUCAACCUCCACUUUUAUGGCUGUGAAAUUUCUGCAGCUUAGUUACAC ........................(((((.(((((.(((((((.(((((.(((.((((..(((((...))))).)))).))).(......).))))).))))))).))))).)))))... (-27.15 = -27.93 + 0.78)
Location | 5,669,496 – 5,669,611 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.09 |
Mean single sequence MFE | -25.45 |
Consensus MFE | -23.01 |
Energy contribution | -23.34 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.02 |
Structure conservation index | 0.90 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.804811 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5669496 115 - 22224390 CUGUAACUAAGCUGCAGAAAUUUCACAGCCAUAAAAGUGGAGGUUGAAAAGCACAGCUUUAACAACUA-CGCUGCAUAAUUUCUUCAGCUAAAUCAGUAGUAUUUCGAAAUAACUC---- (((......(((((.(((((((...(((((((....)))(.(((((.(((((...)))))..))))).-)))))...))))))).)))))....)))...................---- ( -26.60) >DroSec_CAF1 8529 114 - 1 GUGUAACUAAGCUGCAGAAAUUUUACAGCCAUAAAAGUGGAGGUUGAAAUGC--UGCUUUAACAACUUCCUCUGCAUAAUUUCUUCAGCUAAAUCAGUAGUAUUUCGAAAUAACUU---- .....(((((((((.(((((((...(((..........((((((((......--........)))))))).)))...))))))).))))).......))))...............---- ( -22.55) >DroSim_CAF1 9330 118 - 1 GUGUAACUAAGCUGCAGAAAUUUCACAGCCAUAAAAGUGGAGGUUGAAAAGC--AGCUUUAACAACUUCCUCUGCAUAAUUUCUUCAGCUAAAUCAGUAGUAUUUCGAAAUAACUCGAAA .....(((((((((.(((((((...(((..........((((((((.((((.--..))))..)))))))).)))...))))))).))))).......)))).((((((......)))))) ( -27.21) >consensus GUGUAACUAAGCUGCAGAAAUUUCACAGCCAUAAAAGUGGAGGUUGAAAAGC__AGCUUUAACAACUUCCUCUGCAUAAUUUCUUCAGCUAAAUCAGUAGUAUUUCGAAAUAACUC____ .....(((((((((.(((((((...(((((((....)))).(((((.(((((...)))))..)))))....)))...))))))).))))).......))))................... (-23.01 = -23.34 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:32 2006