Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 738,377 – 738,488 |
Length | 111 |
Max. P | 0.750145 |
Location | 738,377 – 738,488 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.79 |
Mean single sequence MFE | -42.90 |
Consensus MFE | -34.10 |
Energy contribution | -33.38 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.15 |
Mean z-score | -1.68 |
Structure conservation index | 0.79 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.750145 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 738377 111 + 22224390 ------AUCCCGAAACGGGACGAUCUG---CCUCUCGUUGCUUGGGCAAGUGUGGAUGUUUGGUGGACCCAGUGGCAUCCAUCGGGUCCACUUCGCAAUUAUUAGCCGGAGUUCGUUGUU ------....((((((((((.(.....---).)))))))((((.(((.((((....(((..(((((((((.((((...)))).)))))))))..)))..)))).))).)))))))..... ( -43.40) >DroSec_CAF1 54198 114 + 1 ------AUCCGGAAACGGGACGAUCUGCCGCCUCUCGUUGCUUGGGCAAGUGUGGAAGUUUGGUGGACCCAGUGGCAUCCAUCGGGUCCACUUCGCAAUUAUCAGCUGGAGUUCGUUGUU ------..(((....)))(((((.((.((.((.(.(.((((....))))).).))..((..(((((((((.((((...)))).)))))))))..))...........)))).)))))... ( -45.40) >DroSim_CAF1 23544 114 + 1 ------AUCCGGAAACGGGACGAUCUGCCGCCUCUCGUUGCUUGUGCAAGUGUGGAAGUUUGGUGGACCCAGUGGCAUCCAUCGGGUCCACUUCGCAAUUAUCAGCUGGAGUUCGUUGUU ------..(((....)))(((((.((.((.((.(.(.((((....))))).).))..((..(((((((((.((((...)))).)))))))))..))...........)))).)))))... ( -45.60) >DroEre_CAF1 60733 117 + 1 AUCCCGAUCCCGAGAUGGGACGAUCUG---CCUCUCUUUGCUUGGGCAAAAGUGGAUGCUUGGCGGACCCAGUGGCAUCCAUCGGGUCCUCUUCGCAAUUAUCAGCCAGAGUUCGUUGUU .((((.(((....)))))))(((((((---((.((.(((((....))))))).)).(((..((.((((((.((((...)))).)))))).))..))).........))))..)))..... ( -40.40) >DroYak_CAF1 57336 111 + 1 ------AUCCCGAGGUGGGACGAUCUG---CCUCUCUUUGCUUGGGCAAAAGUGGAAGCUUGUUGGACCCAGUGGCAUCCAUCGGGUCCGCGUCGCAGUUAUCUGCCAGAGUUCGUUGUU ------.((((((((..(......)..---))))..(((((....))))).).)))(((((((.((((((.((((...)))).))))))))...((((....))))..)))))....... ( -39.70) >consensus ______AUCCCGAAACGGGACGAUCUG___CCUCUCGUUGCUUGGGCAAGUGUGGAAGUUUGGUGGACCCAGUGGCAUCCAUCGGGUCCACUUCGCAAUUAUCAGCCGGAGUUCGUUGUU ........((......))(((((((((...((...((((((....)))).)).))..((..(((((((((.((((...)))).)))))))))..))..........))))..)))))... (-34.10 = -33.38 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:01 2006