Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,668,337 – 5,668,457 |
Length | 120 |
Max. P | 0.657909 |
Location | 5,668,337 – 5,668,457 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -26.16 |
Consensus MFE | -23.29 |
Energy contribution | -22.85 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.06 |
Mean z-score | -2.00 |
Structure conservation index | 0.89 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657909 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5668337 120 + 22224390 GAAUUUGAAUACUCACCGAAUGUGUACGAAAAGAAAUAUAAUGCCACACAUAUGAUGACGUGUUAAUUUUGCUUAAUUUAUGAAAUUAGCAACGUUCUGACUACGAGUUUUCAACACAAA ....(((((.((((..((.((((((....................)))))).))..((((((((((((((...........))))))))).)))))........)))).)))))...... ( -22.75) >DroSec_CAF1 7394 120 + 1 GAAUUUGAAUACUCACCGAGUGUGUAUGAAAAGAAAUAUAAUGCCACACAUAUGAUGACGUGUUAAUUUUGCUUAAUUUAUGAAAUUAGCAACGUUCUGACUACGAGUUUUCAACACAAA ....(((((.((((.....((((((((.............))).))))).......((((((((((((((...........))))))))).)))))........)))).)))))...... ( -24.82) >DroSim_CAF1 8197 120 + 1 GAAUUUGAAUACUCACCGAGUGUGUAUGAAAAGAAAUAUAAUGCCACACAUGUGAUGACGUGUUAAUUUUGCUUAAUUUAUGAAAUUAGCAACGUUCUCACUACGAGUUUUCGACACAAA ....(((((.((((.....((((((((.............))).)))))..((((.((((((((((((((...........))))))))).))))).))))...)))).)))))...... ( -30.92) >consensus GAAUUUGAAUACUCACCGAGUGUGUAUGAAAAGAAAUAUAAUGCCACACAUAUGAUGACGUGUUAAUUUUGCUUAAUUUAUGAAAUUAGCAACGUUCUGACUACGAGUUUUCAACACAAA ....(((((.((((..((.((((((....................)))))).))..((((((((((((((...........))))))))).)))))........)))).)))))...... (-23.29 = -22.85 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:27 2006