Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,668,192 – 5,668,297 |
Length | 105 |
Max. P | 0.833694 |
Location | 5,668,192 – 5,668,297 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -29.97 |
Consensus MFE | -28.53 |
Energy contribution | -28.87 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.99 |
Structure conservation index | 0.95 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.833694 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5668192 105 - 22224390 CAUACAUUUCCAUGGCAAUCGAGCUUAACCAGCAUUUCCCACUUAAGCCUUCAGGUUCGGUGAAAAUUUUCGGGUUGGCAGCUGGCUGUCGACUCUUUUGCCUUC .............(((((..(((((.....)))......((((..((((....)))).)))).......))((((((((((....))))))))))..)))))... ( -30.10) >DroSec_CAF1 7265 105 - 1 CAUACAUUUCCAUGGCAAUCGAGUUUAAACAGAAUUUCCCACUUAAGCCUUCAGGUUCGGUGAAAAUUUUCGGGUUGGCAGCUGGCUGUCGACUCUUUUGCCUUC .............(((((............(((((((..((((..((((....)))).)))).))))))).((((((((((....))))))))))..)))))... ( -29.60) >DroSim_CAF1 8068 105 - 1 CAUACAUUUCCAUGGCAAUCGAGUUUAAGCAGAAUUUCCCACUUAAGCCUUCAGGUUCGGUGAAAAUUUUCGGGUUGGCAGCUGGCUGUCGACUCUUUUGCCUUC .............(((((..........(.(((((((..((((..((((....)))).)))).))))))))((((((((((....))))))))))..)))))... ( -30.20) >consensus CAUACAUUUCCAUGGCAAUCGAGUUUAAACAGAAUUUCCCACUUAAGCCUUCAGGUUCGGUGAAAAUUUUCGGGUUGGCAGCUGGCUGUCGACUCUUUUGCCUUC .............(((((............(((((((..((((..((((....)))).)))).))))))).((((((((((....))))))))))..)))))... (-28.53 = -28.87 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:26 2006