Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,667,476 – 5,667,593 |
Length | 117 |
Max. P | 0.753543 |
Location | 5,667,476 – 5,667,593 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.56 |
Mean single sequence MFE | -30.25 |
Consensus MFE | -23.19 |
Energy contribution | -25.75 |
Covariance contribution | 2.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.77 |
Structure conservation index | 0.77 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.738822 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5667476 117 + 22224390 --UUUUU-UUUUUUUUACAUUUCGGUUAUAUUUGAUGAUGGCUUGGGCUGGUGCGAAAAAGUUGCGCAGUCGCCCACAUAAUUAUCGGUUUGAUUUAUGGCAGCAUUUUCGCAGCCAAUU --.....-...............(((((...((((((((....(((((..((((((.....))))))....)))))....))))))))..)))))..((((.((......)).))))... ( -30.70) >DroSec_CAF1 6567 119 + 1 AAUUUUU-UUUUUUUUACAUUUCGGUUAUAUUUGAUGAUGGGUUGGGCUGGUGCGAAAAAGUUGCGCAUUCGCCCACAUAAUUAUCGGUUUGAUUUAUGGCAGCAUUUUCGCAGCCAAUU .......-...............(((((...((((((((..((.((((..(((((.........)))))..))))))...))))))))..)))))..((((.((......)).))))... ( -32.00) >DroAna_CAF1 10674 112 + 1 AAUUUUUGUUGAUUUUUCGCCUCGGUUUUUU--------CGGUUUCGCGGGUGCGAAAAAGUUGCACAGUCGCCCACAUAAUUAUCGGUUUGAUUUAUGGCAGCAUUUUCGCAGCCAAUU ..................((.((((.....)--------)))....))((.((((((((.(((((..(((((((............)))..))))....))))).)))))))).)).... ( -27.60) >DroSim_CAF1 6973 118 + 1 AAUUUUU-U-UUUUUUACAUUUCGGUUAUAUUUGAUGAUGGCUUGGGCUGGUGCGAAAAAGUUGCGCAGUCGCCCACAUAAUUAUCGGUUUGAUUUAUGGCAGCAUUUUCGCAGCCAAUU .......-.-.............(((((...((((((((....(((((..((((((.....))))))....)))))....))))))))..)))))..((((.((......)).))))... ( -30.70) >consensus AAUUUUU_UUUUUUUUACAUUUCGGUUAUAUUUGAUGAUGGCUUGGGCUGGUGCGAAAAAGUUGCGCAGUCGCCCACAUAAUUAUCGGUUUGAUUUAUGGCAGCAUUUUCGCAGCCAAUU .......................(((((...((((((((....(((((..((((((.....))))))....)))))....))))))))..)))))..((((.((......)).))))... (-23.19 = -25.75 + 2.56)
Location | 5,667,476 – 5,667,593 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.56 |
Mean single sequence MFE | -22.23 |
Consensus MFE | -18.69 |
Energy contribution | -18.75 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.04 |
Mean z-score | -1.64 |
Structure conservation index | 0.84 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.753543 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5667476 117 - 22224390 AAUUGGCUGCGAAAAUGCUGCCAUAAAUCAAACCGAUAAUUAUGUGGGCGACUGCGCAACUUUUUCGCACCAGCCCAAGCCAUCAUCAAAUAUAACCGAAAUGUAAAAAAAA-AAAAA-- ...((((.((......)).))))...........(((.......(((((...((((.........))))...))))).......))).........................-.....-- ( -22.64) >DroSec_CAF1 6567 119 - 1 AAUUGGCUGCGAAAAUGCUGCCAUAAAUCAAACCGAUAAUUAUGUGGGCGAAUGCGCAACUUUUUCGCACCAGCCCAACCCAUCAUCAAAUAUAACCGAAAUGUAAAAAAAA-AAAAAUU ...((((.((......)).))))...........(((.......(((((...((((.........))))...))))).......))).........................-....... ( -22.64) >DroAna_CAF1 10674 112 - 1 AAUUGGCUGCGAAAAUGCUGCCAUAAAUCAAACCGAUAAUUAUGUGGGCGACUGUGCAACUUUUUCGCACCCGCGAAACCG--------AAAAAACCGAGGCGAAAAAUCAACAAAAAUU ..((.((((((....((((..((((((((.....)))..)))))..))))....))).....((((((....))))))...--------..........))).))............... ( -21.00) >DroSim_CAF1 6973 118 - 1 AAUUGGCUGCGAAAAUGCUGCCAUAAAUCAAACCGAUAAUUAUGUGGGCGACUGCGCAACUUUUUCGCACCAGCCCAAGCCAUCAUCAAAUAUAACCGAAAUGUAAAAAA-A-AAAAAUU ...((((.((......)).))))...........(((.......(((((...((((.........))))...))))).......))).......................-.-....... ( -22.64) >consensus AAUUGGCUGCGAAAAUGCUGCCAUAAAUCAAACCGAUAAUUAUGUGGGCGACUGCGCAACUUUUUCGCACCAGCCCAACCCAUCAUCAAAUAUAACCGAAAUGUAAAAAAAA_AAAAAUU ..((((.((((((((.(.(((((((((((.....)))..)))))...((....))))).).))))))))))))............................................... (-18.69 = -18.75 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:25 2006