Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,666,191 – 5,666,303 |
Length | 112 |
Max. P | 0.858338 |
Location | 5,666,191 – 5,666,303 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.89 |
Mean single sequence MFE | -28.20 |
Consensus MFE | -26.09 |
Energy contribution | -25.87 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -2.09 |
Structure conservation index | 0.93 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.858338 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5666191 112 - 22224390 CAUUUA--------UUUGGUGAUUAUAUUUUCACUUUCAUGGCGAACUCGCUUAAUAUUCGCGCUUCUCUUUGAACAGCUUAACGGGGAUAAUCCCCAACAUCAUCGGUUCGUCAAAGUA ......--------...(((((........)))))....((((((((.((..........((..(((.....)))..)).....((((.....))))........))))))))))..... ( -27.80) >DroSec_CAF1 5358 120 - 1 CAUUUAUUCAUUGAUUUGGUGAUUAUAUUUUCACUUUCACGGCGGACUCGCUUAAUAUUCGCGCAUCUCUUUGAACAGCUUAACGGGGAUAAUCCCCAACAUCAUCGGUUCGUCAAAGUA ...........(((...(((((........))))).))).(((((((.((..........((...((.....))...)).....((((.....))))........)))))))))...... ( -28.00) >DroSim_CAF1 5746 120 - 1 CAUUUAUUCAUUGAUUUGGUGAUUAUAUUUUCACUUUCACGGCGGACUCGCUUAAUAUUCGCGCUUCUCUUUGAACAGCUUAACGGGGAUAAUCCCCAACAUCAUCGGUUCGUCAAAGUA ...........(((...(((((........))))).))).(((((((.((..........((..(((.....)))..)).....((((.....))))........)))))))))...... ( -28.80) >consensus CAUUUAUUCAUUGAUUUGGUGAUUAUAUUUUCACUUUCACGGCGGACUCGCUUAAUAUUCGCGCUUCUCUUUGAACAGCUUAACGGGGAUAAUCCCCAACAUCAUCGGUUCGUCAAAGUA .................(((((........))))).....(((((((.((..........((...((.....))...)).....((((.....))))........)))))))))...... (-26.09 = -25.87 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:24 2006