Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,661,991 – 5,662,111 |
Length | 120 |
Max. P | 0.535569 |
Location | 5,661,991 – 5,662,111 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.97 |
Mean single sequence MFE | -37.40 |
Consensus MFE | -28.77 |
Energy contribution | -29.27 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.13 |
Mean z-score | -1.41 |
Structure conservation index | 0.77 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535569 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5661991 120 + 22224390 GGUGGAGUAGUGGGUCGGAAAUGGACUUGGCCAGGGAUUAUGCCACUGAAACUUAUGGAAGUGAAAUCGAGCGCGCGAAGUUCAAGUGGCAGCCAUUGUCCACCUCGGAAAACACACACA .(((.....(((..((.((..(((((.((((.........(((((((..(((((......(((........)))...)))))..)))))))))))..)))))..)).))...))).))). ( -39.10) >DroSec_CAF1 1641 118 + 1 GGUGGGGUAGUGGGGCGGAAAUGGACUUGGCCAGGGAUUAUGCCACUGAAACUUAUGGAAGUGAAAUCGAGCGCGCGAAGUUCAAGUGGCAGCCAUUGUCCACCUCGGAAAACAC--ACA .((((..(..(((((.((((((((.(((....))).....(((((((..(((((......(((........)))...)))))..))))))).))))).))).)))))..)..).)--)). ( -38.00) >DroAna_CAF1 6749 106 + 1 ----------GGGCCACGAGGAGGUCCUGCAAGGGGAUUAUGCCACUGAAACUUAUGGAAGUGAAAUCGAGCGCGUGAAGUUCAAGUGGCAGCCAUUGUCCACCUCGGAAAACA----CA ----------......(((((.((....((((..((....(((((((..(((((......(((........)))...)))))..))))))).)).)))))).))))).......----.. ( -33.80) >DroSim_CAF1 1647 118 + 1 GGUGGGGAAGUGGGGCGGAAAUGGACUUGGCCAGGGAUUAUGCCACUGAAACUUAUGGAAGUGAAAUCGAGCGCGCGAAGUUCAAGUGGCAGCCAUUGUCCACCUCGGAAAACAC--ACA ((((((..((((((((.((.......)).)))........(((((((..(((((......(((........)))...)))))..))))))).))))).))))))...........--... ( -38.70) >consensus GGUGGGGUAGUGGGGCGGAAAUGGACUUGGCCAGGGAUUAUGCCACUGAAACUUAUGGAAGUGAAAUCGAGCGCGCGAAGUUCAAGUGGCAGCCAUUGUCCACCUCGGAAAACAC__ACA ...........((((.((((((((.(((....))).....(((((((..(((((......(((........)))...)))))..))))))).))))).))).)))).............. (-28.77 = -29.27 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:19 2006