Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,661,037 – 5,661,157 |
Length | 120 |
Max. P | 0.536526 |
Location | 5,661,037 – 5,661,157 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.21 |
Mean single sequence MFE | -36.83 |
Consensus MFE | -33.83 |
Energy contribution | -34.49 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.67 |
Structure conservation index | 0.92 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.536526 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5661037 120 - 22224390 GAUCCACUUUGGAGAGCUUGGAAUCCAACAUGCCAUCCAAGCACCAUCUGAUUGCAGAAAGCCCCCAAUCUUGGCCAGCUGACGAUCAGUUGUAUGUGAAGUCUCCACGUGUUUGGGAAU ..(((((..(((((((((((((.............)))))))..((.((((((((((...(((.........)))...))).))))))).)).........))))))...))...))).. ( -36.72) >DroSec_CAF1 685 119 - 1 GAUCCACUUUGGAGAGCUUGGAAUCCAACAUGCCACCCAAGCAACAUCUGAUUGCAGAAAGCCCGCAAUCUUGGCCAGCUGACGAUCAGUUGUAUGUGAAGUCUCCACGUGUUUG-GAAU ..((((...((((((((((((...............)))))).(((.((((((((((...(((.........)))...))).))))))).)))........))))))......))-)).. ( -37.76) >DroSim_CAF1 685 119 - 1 GAUCCACUUUGGUGAGCUUGGAAUCCAACAUGCCACCCAAGCAACAUCUGAUUGCAGAAAGCCCGCAAUCUUGGCCAGCUGACGAUCAGUUGUAUGUGAAGUCUCCACGUGUUUG-GAAU ..(((((((.((((.((.((........)).)))))).)))..(((.((((((((((...(((.........)))...))).))))))).)))(((((.......)))))...))-)).. ( -36.00) >consensus GAUCCACUUUGGAGAGCUUGGAAUCCAACAUGCCACCCAAGCAACAUCUGAUUGCAGAAAGCCCGCAAUCUUGGCCAGCUGACGAUCAGUUGUAUGUGAAGUCUCCACGUGUUUG_GAAU ....(((..((((((((((((...............)))))).(((.((((((((((...(((.........)))...))).))))))).)))........)))))).)))......... (-33.83 = -34.49 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:18 2006