Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,648,949 – 5,649,052 |
Length | 103 |
Max. P | 0.733100 |
Location | 5,648,949 – 5,649,052 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 77.78 |
Mean single sequence MFE | -33.77 |
Consensus MFE | -21.12 |
Energy contribution | -21.38 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.27 |
Mean z-score | -1.83 |
Structure conservation index | 0.63 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.733100 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5648949 103 + 22224390 CUGGAUUUUGGCCUUCAGAUUCUGGAGACUGGAACUUUGGACUCUGGACUUUGGACUCUGGACUCUGGACUAGGGAUCCGACCCAACCUAACAGAGUGCAGAA ......((..(..((((((.((..(((.......)))..)).))))))..)..)).((((.((((((...((((............)))).)))))).)))). ( -33.40) >DroSec_CAF1 38274 95 + 1 CUGGAUUUUGGACUGCAGAUUCUGGAGCCUGGAACC--------AGUAACCAGGACCCUGGACUCUGGAUUCGGGAUCCGACCCAACCUGACAGAGUGCAGAG (((.((((((.....(((....((((.((((((.((--------((...((((....))))...)))).)))))).)))).......))).)))))).))).. ( -35.40) >DroSim_CAF1 37386 95 + 1 CUGGAUUUUGGACUGCAGAUUCUGGAGCCUGGAACC--------AGUAACCAGGACCCUGGACUCUGGACUCGGGAUCCGACCCAACCUGACAGAGUGCAGAG ((((.(((..(.((.(((...))).)).)..)))))--------))...((((....)))).(((((.(((((((......))).........)))).))))) ( -34.20) >DroYak_CAF1 38428 88 + 1 CUAAAUUCUGGAUGCUGGGUUCUGGAUACUGGAACC---------------UGGACUUUGGACUUUGGACUCGGGAUCUGAGCCAAUCUGACAGAGUGCAGAG ......((((....(..(((((..(...)..)))))---------------..)((((((....((((.(((((...))))))))).....)))))).)))). ( -32.10) >consensus CUGGAUUUUGGACUGCAGAUUCUGGAGACUGGAACC________AGUAACCAGGACCCUGGACUCUGGACUCGGGAUCCGACCCAACCUGACAGAGUGCAGAG .....(((..(.((((((...)))))).)..))).......................(((.((((((.....(((......))).......)))))).))).. (-21.12 = -21.38 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:11 2006