Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,648,037 – 5,648,152 |
Length | 115 |
Max. P | 0.939157 |
Location | 5,648,037 – 5,648,152 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 87.80 |
Mean single sequence MFE | -30.68 |
Consensus MFE | -23.06 |
Energy contribution | -24.68 |
Covariance contribution | 1.62 |
Combinations/Pair | 1.06 |
Mean z-score | -2.38 |
Structure conservation index | 0.75 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.939157 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5648037 115 + 22224390 CGCUCACAACUUUCAAGUGUUUAAUUGCAGUUUGCGAGUGCUAAAUACUUGAUUUAUUUUUUCUGCGUAUAUAUGUAUAUAUGUACAUGCAGCCGAUCUGCAGCUACUUGGGGCU- .((((.(((...(((((((((((.((((.....))))....)))))))))))............((((((((((....)))))))).(((((.....)))))))...))))))).- ( -33.80) >DroSec_CAF1 37416 115 + 1 CGCUCACAACUUUCAAGUGUUUAAUUGCAGUUUGCGAGCGCUAACUACUUGAUUUAUUUUUUCUGCGUAUAUAUGUAUAUAUGUGCAUGCAGCCGAUCUGCAGCUACUUGGGGCU- .((((.(((...(((((((((...((((.....)))).....))).))))))............((((((((((....)))))))).(((((.....)))))))...))))))).- ( -30.40) >DroSim_CAF1 36518 115 + 1 CGCUCACAACUUUCAAGUGUUUAAUUGCAGUUUGCGAGUGCUAAAUACUUGAUUUAUUUUUUCUGCGUAUAUAUGUAUAUAUGCGCAUGCAGCCGAUCUGCAGCUACUUGGGGCU- .((((.(((...(((((((((((.((((.....))))....)))))))))))...........((((((((((....))))))))))(((((.....))))).....))))))).- ( -36.60) >DroEre_CAF1 37433 97 + 1 ----CACAACUUUCAAGUGCUUAAUUGCAGCCUGCGAGUGCUAAAUACUUGAUUUAUUUUUUCUGCGCAUGU----ACAU----------GGCCGAUCUGCAGCUACUUGGGGCU- ----......(..((((((((.....((((....((((((.....))))))..........((.((.(((..----..))----------))).)).))))))).)))))..)..- ( -21.50) >DroYak_CAF1 37506 110 + 1 CGCUCACAACUUUCAAGUGUUUAAUUGCAGUUUGCAAGUGCUAAAUACUUGAUUUAUUUUUUCUGCGUAUAUAUGCACAUC------UGCAGCCGAUCUGCAGCUACUUGGGGCUA .((((.(((...(((((((((((.((((.....))))....)))))))))))...........(((((....)))))...(------(((((.....))))))....))))))).. ( -31.10) >consensus CGCUCACAACUUUCAAGUGUUUAAUUGCAGUUUGCGAGUGCUAAAUACUUGAUUUAUUUUUUCUGCGUAUAUAUGUAUAUAUG__CAUGCAGCCGAUCUGCAGCUACUUGGGGCU_ .((((.(((...(((((((((((.((((.....))))....)))))))))))..........(((((.((...(((((........)))))....)).)))))....))))))).. (-23.06 = -24.68 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:10 2006