Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,646,193 – 5,646,287 |
Length | 94 |
Max. P | 0.988605 |
Location | 5,646,193 – 5,646,287 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 85.74 |
Mean single sequence MFE | -39.08 |
Consensus MFE | -29.04 |
Energy contribution | -29.32 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.07 |
Mean z-score | -3.00 |
Structure conservation index | 0.74 |
SVM decision value | 2.13 |
SVM RNA-class probability | 0.988605 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5646193 94 - 22224390 GGUCGU-UCGGUCAGCAGAAUGCAUCCCUCGAGUGCAGUUGGCAAAUUGGACGGGAAACGUCGCUGGGAAUGGGCUGGUAAC-------AGCCAGCUGGCAA---- ......-...((((((......((((((.(((((.(((((....))))).)).(....).)))..))).)))(((((....)-------)))).))))))..---- ( -36.50) >DroSec_CAF1 35700 94 - 1 GGUCGU-UCGGUCAGCAGAAUGCAUUCCUCGAGUGCAGUUGGCAAAUUGCACGGGAAACGUCGCUGGGAAUGGGCUGGUAAC-------AGCCAGCUGGCAA---- ......-...((((((......((((((((((((((((((....)))))))).(....).)))..)))))))(((((....)-------)))).))))))..---- ( -42.70) >DroSim_CAF1 34776 94 - 1 GGUCGU-UCGGUCAGCAGAAUGCAUCCCUCGAGUGCAGUUGGCAAAUUGCACGGGAAACGUCGCUGGGAAUGGGCUGGUAAC-------AGCCAGCUGGCAA---- ......-...((((((......((((((.(((((((((((....)))))))).(....).)))..))).)))(((((....)-------)))).))))))..---- ( -41.00) >DroEre_CAF1 35788 88 - 1 -------UCGGUCAGCAGAAUGCAUCCCUCGAGUGCAGUUGGCAAAUUGCACGGGAAACGUCGCCGGGAAUGGGUUGCUAAC-------AGCCAGCUGGCAA---- -------...((((((......((((((.(((((((((((....)))))))).(....).)))..))).)))(((((....)-------)))).))))))..---- ( -36.60) >DroPer_CAF1 88861 100 - 1 ------GUUGGUCAGCAAAAUGCAUCCCUGGAGUGCAGUUGGCAAAUUGCACGGAAAACGUCGCUGGGAAUGAGCUGGCGACUGGAAGCUGCAAGCUGGCAACUGG ------((((.(((((.....((.(((.....((((((((....)))))))).......(((((..(.......)..))))).))).)).....)))))))))... ( -38.60) >consensus GGUCGU_UCGGUCAGCAGAAUGCAUCCCUCGAGUGCAGUUGGCAAAUUGCACGGGAAACGUCGCUGGGAAUGGGCUGGUAAC_______AGCCAGCUGGCAA____ ..........((((((......((((((.(((((((((((....)))))))).(....).)))..))).)))(((...............))).))))))...... (-29.04 = -29.32 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:09 2006