Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,636,021 – 5,636,111 |
Length | 90 |
Max. P | 0.696350 |
Location | 5,636,021 – 5,636,111 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 75.44 |
Mean single sequence MFE | -25.40 |
Consensus MFE | -15.45 |
Energy contribution | -15.95 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.24 |
Mean z-score | -1.74 |
Structure conservation index | 0.61 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.696350 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5636021 90 + 22224390 AUAACGCAGAGAAUCAUCAGCGUGA------AGGAAUGAUUCUCUGCGGGCUGGAACCAGAAGUCCUGCAAAUGUUCUUUUACGGAUUUUAA----CCAG ....(((((((((((((...(....------..).)))))))))))))..((((.....(((((((.(.(((......))).))))))))..----)))) ( -28.40) >DroSec_CAF1 25747 96 + 1 AUAACUCAGAGAAUCUUCAUGAUUUCUUAAUCAUAAUGAUUUCCUGCGGGCUGCAACCAGAAGUCCUGCAGAUGCUCUUUUACGGAUUUUAA----CCAG .......((((((((...((((((....))))))...))))..(((((((((.........)).)))))))...)))).....((.......----)).. ( -21.40) >DroSim_CAF1 25801 90 + 1 AUACUGCAGAGAAUCUUCAGCGUGC------AGUAAUGAUAUCCUGCGGGCUGCAACCAGAAGUCCUGCAGAUGCUCUUUUACGGAUUUUAA----CCAG ...((((((.((.(((.((((.(((------((..........))))).)))).....)))..))))))))............((.......----)).. ( -24.60) >DroEre_CAF1 25720 94 + 1 AUAACGCACGGAAUCUGAAUCGUGA------AUGAAUGAUUCCUUGCGGACUGGAACCAGAAGUCCUGCAGAGGCUUCUUGAAUGAUUUGAAGUUUCGGA .....(((.((((((....(((...------.)))..)))))).)))(((((.........)))))....((((((((...........))))))))... ( -27.20) >consensus AUAACGCAGAGAAUCUUCAGCGUGA______AGGAAUGAUUCCCUGCGGGCUGCAACCAGAAGUCCUGCAGAUGCUCUUUUACGGAUUUUAA____CCAG .....((((((((((......................))))))))))(((((.........))))).((....))......................... (-15.45 = -15.95 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:08 2006