Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,633,694 – 5,633,795 |
Length | 101 |
Max. P | 0.572332 |
Location | 5,633,694 – 5,633,795 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 84.27 |
Mean single sequence MFE | -32.10 |
Consensus MFE | -21.50 |
Energy contribution | -22.26 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.04 |
Mean z-score | -1.76 |
Structure conservation index | 0.67 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.572332 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5633694 101 + 22224390 AAAAGCAGGGGUUGG---UAGCAAAGGGUCCGAGCACUUGCUGCCAGGUUGGAUAGCGUCUCC-GAAAGAUCAAACUCUAACUG-ACGCACCUGCGAUUUUCUCAA ....(((((..((((---((((((...((....))..))))))))))........(((((...-...(((......)))....)-)))).)))))........... ( -31.90) >DroSec_CAF1 23438 101 + 1 AAAAGCAGGGGUUGG---UAGCAAAGGAUCCGAGCACUUGCUGCCAGGUUGGAUUGCGUCUAG-AAAAGAUGAAACUCUAACUG-ACGCACCUGCGACUUUCUCAA ....(((((((((((---((((((..(.......)..)))))))).(((((((...(((((..-...)))))....))))))))-)).).)))))........... ( -33.70) >DroSim_CAF1 23272 101 + 1 AAAAGCAGGGGUUGG---UAGCAAAGGGUCCGAGCACGUGCUGCCAGGUUGGAUUGCGUCUAA-AAAAGAUGAAACUCUAACUG-ACGCACCUGCGAUUUUCUCAA ....(((((((((((---(((((....((....))...))))))).(((((((...(((((..-...)))))....))))))))-)).).)))))........... ( -34.20) >DroEre_CAF1 23481 87 + 1 AGGAGCAGGGCUUGG----------------GAGCACUUGCUGCCAGGUUGGAUUGCGUCUAC--AAAAAUGGAACUCUAACUG-ACGCGCCUGCGAUUUUCCCAA .((((((((((((((----------------.(((....))).))))))......(((((...--..................)-)))).))))).....)))... ( -30.10) >DroYak_CAF1 23318 106 + 1 AAAAACAGGGCUUGGUGGUAGCAAAGGGUCCGAGCACUUGCUGCCAGGUUGGAUUGCGUUCGCUAAGAAAUGGAACUCUAACUGGACGCACCUGCGAUUUUCUCAA .....((((((....(((((((((...((....))..)))))))))(((((((((.(((((.....).)))).)).)))))))....)).))))............ ( -30.60) >consensus AAAAGCAGGGGUUGG___UAGCAAAGGGUCCGAGCACUUGCUGCCAGGUUGGAUUGCGUCUAC_AAAAGAUGAAACUCUAACUG_ACGCACCUGCGAUUUUCUCAA ....(((((.......................(((....)))((..(((((((((.(((((......))))).)).)))))))....)).)))))........... (-21.50 = -22.26 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:07 2006