Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 729,028 – 729,125 |
Length | 97 |
Max. P | 0.727576 |
Location | 729,028 – 729,125 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 83.12 |
Mean single sequence MFE | -29.16 |
Consensus MFE | -17.21 |
Energy contribution | -17.40 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.12 |
Mean z-score | -2.23 |
Structure conservation index | 0.59 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.727576 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 729028 97 - 22224390 AAAUGCUCCCUUGUCAUCAAGUCUGUGCAAAGAA------------------CCAGGAGCUUCAGCUCCGGUUUAUGCACACGAAGAAAAACUCGGCUAAAGUCUGCUGUAGCUU .........((((....))))((((((((..(((------------------((.(((((....)))))))))).)))))).))..........(((((.((....)).))))). ( -30.50) >DroSec_CAF1 44995 97 - 1 AAAUGCUCCCUCGGCAUCAAGUCUGUGCAAAGAA------------------CCAGGAGCUUCAGCUCCGGUUUAUGCACACAAAGAAAAACUCGGCUAAAGUCUGCUGUAGCUU ....(((....(((((.......((((((..(((------------------((.(((((....)))))))))).)))))).............(((....)))))))).))).. ( -31.30) >DroEre_CAF1 49973 95 - 1 AAAUGCUCCCUCGGCAUCAAGUCUGUGCAAAGCA------------------CCAGGAGCCUCAGCUCCGGUUUAUGCACACGAAGAAAAACCCACCUAAA--CUGCUGUAGCUU ....(((....(((((((...((((((((.((.(------------------((.(((((....)))))))))).)))))).)).))..............--.))))).))).. ( -25.86) >DroYak_CAF1 46536 113 - 1 AAAUGCUCCCUCGGCAGCAAGUCUGUGCAAAGAACGAGAACCAGAACCAGGACCUGGAGCCUCAGUUCCUGUUUAUGCACACGAAGAAAAACUCACCUAAA--CUGCUGUGGCUC ........((.((((((....((((((((..(((((.((((..(..((((...))))..)....)))).))))).)))))).)).((.....)).......--)))))).))... ( -29.00) >consensus AAAUGCUCCCUCGGCAUCAAGUCUGUGCAAAGAA__________________CCAGGAGCCUCAGCUCCGGUUUAUGCACACGAAGAAAAACUCACCUAAA__CUGCUGUAGCUU ....(((....(((((.......((((((.(((......................(((((....)))))..))).))))))....((.....))..........))))).))).. (-17.21 = -17.40 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:57 2006