Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,624,912 – 5,625,011 |
Length | 99 |
Max. P | 0.931140 |
Location | 5,624,912 – 5,625,011 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 77.64 |
Mean single sequence MFE | -35.30 |
Consensus MFE | -20.66 |
Energy contribution | -22.47 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.30 |
Mean z-score | -2.15 |
Structure conservation index | 0.59 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.931140 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5624912 99 + 22224390 GAAUUUCAUCUUGGACUUUAGAUGGGAUUUCAGCAGGAACUUCUGCUGGGGUUUCAGCUGGGGUUUCCGCUGGAGCUUCAGCUACAACUUGAGCUGGAA ((((..(((((........)))))..))))((((.((((((((....))))))))((((((((((((....)))))))))))).........))))... ( -39.30) >DroSec_CAF1 14619 99 + 1 GGAUUUCAUCUUGGACUUUAGAUGGGACUUCAGCAGGAACUUCUGCUGGUGUAUAAACUGGGGUUUCCGCUGGAGCUUCAUCUACAACUUGAGCUGGAA ...(((((.((..(....(((((((..(((((((.((((((....(..((......))..))))))).)))))))..)))))))....)..)).))))) ( -34.30) >DroSim_CAF1 14969 99 + 1 GGAUUUCAUCUUGGACUUUAGCUGGGACUUCAGCAGGAACUUCUGCUGGGGUUUCAACUGGGGUUUCCGCUGGAGCUUCAUCUACAACUUGAACUGGAA ....((((..(((((((((((.((..(((((((((((....)))))))))))..)).)))))))).....((((......)))))))..))))...... ( -34.20) >DroEre_CAF1 14611 99 + 1 GGAUUUCAUCUUCGAUUUUGGAUGGGAUGUCAGCAGGAACUUCUGCAGGGACUUCAGCUGGGGCUUCCGCUGGAACAUCGGCUUGAACUUGAGCUGGAA ..((..(((((........)))))..))(((.(((((....)))))...)))(((((((.(((.(((.((((......))))..)))))).))))))). ( -34.20) >DroYak_CAF1 14382 99 + 1 GGAUUUCAUCUUGUUGCUUAGAUGGGAUUUCAGCUGGUACUUCUGCAGUGUUUUCAGCUGUGGUUUCCGCUGGAACUUCAGCGAGAACCUGAACUGGAA ((((..(((((........)))))..))))(((((((((((.....))))...))))))).((((..((((((....))))))..)))).......... ( -33.30) >DroAna_CAF1 13888 99 + 1 GAACUUCCACUGGGGCUUCAGGGGCGAUGGCAGCUGGGAUUUCGGCGGGAGCUUCAGCUGGGGUUUGUGGCACGGCUUCAGUGGGAAUCUCAACUGGAG ....(((((((((((((((((..((....))..))))......(.((.(((((((....))))))).)).)..)))))))))))))..(((.....))) ( -36.50) >consensus GGAUUUCAUCUUGGACUUUAGAUGGGAUUUCAGCAGGAACUUCUGCUGGGGUUUCAGCUGGGGUUUCCGCUGGAGCUUCAGCUACAACUUGAACUGGAA ...((((((((........))))))))(((((((.(((((..(.((..........)).)..))))).))))))).(((((((........))))))). (-20.66 = -22.47 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:01 2006