Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,619,971 – 5,620,087 |
Length | 116 |
Max. P | 0.519371 |
Location | 5,619,971 – 5,620,087 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 82.36 |
Mean single sequence MFE | -50.98 |
Consensus MFE | -31.40 |
Energy contribution | -31.90 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.27 |
Mean z-score | -1.85 |
Structure conservation index | 0.62 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519371 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5619971 116 + 22224390 CUGCAAGCCCUCCAGCGUGGACUCGUACAGUUCGCUGCUAUUGAGGGUAAGCAGGGCGAGCGGCAGACCGGAGAUUCCGGAGAUUUCCGGCACGGAGACGCUGCGCCAGAGCAGCA ((((..((((((.((((((((((.....))))))).)))...))))))..))))(((..(((((.(.(((((((((.....))))))))))..(....)))))))))......... ( -53.60) >DroPse_CAF1 49986 116 + 1 CUGCAGACUUUCGAAUGUGGUCUCGUACAGAUCGCUGCCAUUGAGAGACCACAAGGCCAGCGGCAGUUCGGACAGCCCCGAGAGAUCCGGCACGGAGACACUCCGCCAAAGCACCA .(((.(((((((((((((((((((...(((....))).......))))))))...(((...))).))))((......))))))).)).(((..((((...)))))))...)))... ( -38.10) >DroSim_CAF1 10371 116 + 1 CUGCAGGCCCUCCAGCGUGGACUCGUACAGCUCGCUGCCAUUGAGGGUCAGCAGGGCGAGGGGCAGACCGGAGAUUCCGGAGAUCUCCGGCACGGAGACGCUGCGCCAGAGCAGCA ((((.((((((((((((.((.((.....))))))))).....))))))).)))).((..((.((((.(((((((((.....)))))))))..((....)))))).))...)).... ( -55.00) >DroYak_CAF1 9697 116 + 1 CUGCAAACCCUCCAGCGUGGACUCGUACAGCUCGCUGCUAUUGAGGGUCAGCAGGGCGAGGGGCAGGCCGGAGAUUCCGGAGAUCUCCGGCACGGAGACGCUGCGCCACAGCAGCA ((((..((((((.((((((..((.....))..))).)))...))))))..)))).((..((.((((((((((((((.....)))))))))).((....)))))).))...)).... ( -57.80) >DroAna_CAF1 9934 116 + 1 CUGCAGGCCCUCGAAGGUGGCGGCGUAGAGCUCGCUGCCGUUGAGGGUCAGCAGGGCGAGGGGCAGGCCGGAGAGGCCGCUCAGCUCCGGCACGGAGACGCUCCGCCAAAGCAGCA ((((.(((((((((.((..(((((.....)).)))..)).))))))))).((.(((((..((((.((((.....))))))))..(((((...))))).))))).))....)))).. ( -67.00) >DroPer_CAF1 56878 116 + 1 CUGCAGACUUUCGAAUGUGGUCUCGUACAGAUCGCUGCCAUUGAGUGACCACAAGGCCAGCGGCAGUUCGGACAGCCCCGAGAGAUCCGACACGGAGACACUCCGCCAAAGCACCA .(((.((((((((...((.(((.((.((.(.((((((((.(((........))))).))))))).)).))))).))..)))))).)).....(((((...))))).....)))... ( -34.40) >consensus CUGCAGACCCUCCAACGUGGACUCGUACAGCUCGCUGCCAUUGAGGGUCAGCAGGGCGAGCGGCAGACCGGAGAGUCCGGAGAGCUCCGGCACGGAGACGCUCCGCCAAAGCAGCA ((((.(((((((....((((...((.......))...)))).))))))).)))).((....(((.(.((((((...........)))))))..(....).....)))...)).... (-31.40 = -31.90 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:00 2006