Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,613,165 – 5,613,275 |
Length | 110 |
Max. P | 0.785443 |
Location | 5,613,165 – 5,613,275 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 97.64 |
Mean single sequence MFE | -24.98 |
Consensus MFE | -22.22 |
Energy contribution | -22.46 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.47 |
Structure conservation index | 0.89 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.785443 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5613165 110 - 22224390 UUGCAAACCAAACAAGCGUGUACUAUUUUAACCUUUAGAGUUUAGCAAUCAACUGGCAAUGGACAUUACCAUUUGUUGGUAGCAACUAGCGGCUUAAUAGACGCCAUAAA ...............(.((((.(((((....((.....((((..((.((((((....(((((......))))).)))))).))))))...))...))))))))))..... ( -21.30) >DroSec_CAF1 3089 110 - 1 UUGCAAACCAAACAAGCGUGUACUAUUUUAACCUUUAGAGUUGAGCAAUCAACUGGCAAUGGUCAUUACCAUUUGUUGGUAGCAACUAGCGGCUUAAUAGACGCCAUAAA ...............(.((((.(((((...........((((((....))))))(((..((((..((((((.....))))))..))))...))).))))))))))..... ( -26.70) >DroSim_CAF1 3017 110 - 1 UUGCAAACCAAACAAGCGUGUACUAUUUUAACCUUUAGAGUUGAGCAAUCAACUGGCAAUGGUCAUUACCAUUUGUUGGUAGCAACUAGCGGCUUAAUAGACGCCAUAAA ...............(.((((.(((((...........((((((....))))))(((..((((..((((((.....))))))..))))...))).))))))))))..... ( -26.70) >DroEre_CAF1 3014 110 - 1 UUGCAAACCAAACAAGUGUGUACUAUUUUAACCUUUAGAGUUGAGCAAUCAACUGGCAAUGGAUAUUACCAUUUGUUGGUAGCAACUAGCGGCUUAAUAGAUGCCAUAAA ((((..(((((.((((((.(((.(((((...((.....((((((....))))))))....))))).)))))))))))))).)))).....(((.........)))..... ( -29.80) >DroYak_CAF1 2967 110 - 1 UUGCAAACCAAACAAGCGUGUACUAUUUUAACCUUUAGAGUUUAGCAAUCAACUGGCAAUGGACAUUACCAUUUGUUGGUAGCAACUAGCGGCUUAAUAGAUGCCAUAAA ((((..............(((...((((((.....))))))...)))....((..(((((((......))).))))..)).)))).....(((.........)))..... ( -20.40) >consensus UUGCAAACCAAACAAGCGUGUACUAUUUUAACCUUUAGAGUUGAGCAAUCAACUGGCAAUGGACAUUACCAUUUGUUGGUAGCAACUAGCGGCUUAAUAGACGCCAUAAA ((((..(((((.(((((.....(((..........)))((((((....)))))).)).((((......)))))))))))).)))).....(((.........)))..... (-22.22 = -22.46 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:58 2006