Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,602,860 – 5,602,959 |
Length | 99 |
Max. P | 0.601315 |
Location | 5,602,860 – 5,602,959 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.09 |
Mean single sequence MFE | -17.42 |
Consensus MFE | -2.34 |
Energy contribution | -2.14 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.22 |
Mean z-score | -1.48 |
Structure conservation index | 0.13 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.601315 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5602860 99 + 22224390 ACGUAUUGAGGCUUCUAAUCGCUUUUAUUAA-----UAUUAACUCUACUU----------UCAGG--UUGUU----CACUUCUUAUUGCGUGAAAGUUCUUAACUUAUCUCGUCUUUAAU (((...((((((........)).........-----..........((((----------(((.(--(.((.----........)).)).)))))))......))))...)))....... ( -12.90) >DroSec_CAF1 4487 99 + 1 ACAUAUGUAGGUUGCUAAUUGCUUCUAUUAA-----UUUUAACUCCACUU----------UCAGG--UUGUU----CACUUCUUACAGCGUGAAAGUUCUUAACUUAUCUUGUCUUUAAU (((...(((((((((.....)).........-----..........((((----------(((.(--((((.----........))))).)))))))....)))))))..)))....... ( -19.50) >DroSim_CAF1 5357 99 + 1 ACAUAUGUAGGUUGCUAAUUGCUUCUAUUAA-----UCUUAACUCCACUU----------UCAGG--UUGUU----CACUUCUUACAGCGUGAAAGUUCUUAACUUAUCUUGUCUUUAAU (((...(((((((((.....)).........-----..........((((----------(((.(--((((.----........))))).)))))))....)))))))..)))....... ( -19.50) >DroEre_CAF1 5048 110 + 1 CCAU----CGGAUUUUAAUUACUUUUACUAACAUUGUCUUAACUUCACUUUAGCCAAAGUUCAGG--UAGUU----CAUUACUUACAGCGUGAAAGUUCUUAACUUAUCUUAUCCUGGAU (((.----.((((.((((..((((((((..............((..(((((....)))))..))(--((((.----....)).)))...))))))))..))))........))))))).. ( -15.70) >DroYak_CAF1 5091 111 + 1 ACAU----AGGUUUUUAAUUGCUUUUAUUAA-----UCUCAACUUCACGUUAGCCAAAGUUUUGACUUUGUUUUAACAGUUCUUACAGCGUGAGAGUUCUUAACUUAUCACGUCGUUAAU ....----(((((..(((......)))..))-----))).........(((((.((((((....))))))..))))).......((.((((((((((.....)))).)))))).)).... ( -19.50) >consensus ACAUAU__AGGUUUCUAAUUGCUUUUAUUAA_____UCUUAACUCCACUU__________UCAGG__UUGUU____CACUUCUUACAGCGUGAAAGUUCUUAACUUAUCUUGUCUUUAAU .......................................................................................(((.((((((.....)))).)).)))....... ( -2.34 = -2.14 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:49 2006