Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 728,279 – 728,382 |
Length | 103 |
Max. P | 0.940686 |
Location | 728,279 – 728,382 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 73.35 |
Mean single sequence MFE | -35.96 |
Consensus MFE | -17.96 |
Energy contribution | -19.08 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.18 |
Mean z-score | -2.05 |
Structure conservation index | 0.50 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.940686 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 728279 103 - 22224390 ACUGGGGAGUGUUUUAGGUG---GCAGGCCAGGCCGGGACGGGCCAAAAAGUGCUCCAUAGAAAACAUAUUGUGGAAUUUGUCAACAUUCCUGGGGCGAAAG-CGC-----C---- .((.((((((((......((---(((((...((((......)))).........(((((((........))))))).))))))))))))))).))((....)-)..-----.---- ( -36.20) >DroSec_CAF1 44271 103 - 1 ACUGGGGAGUGUUUUAGGUG---ACAGGCCAGGCCGGGACGGGCCAAAAAAUGCUCCAUAGAAAGCAUAUUGUGGAAUUUGUCAACAUUCCUGAGGCGAAAG-CGC-----C---- .((.((((((((......((---((((.(((((((......)))).....(((((........)))))....)))...)))))))))))))).))((....)-)..-----.---- ( -38.00) >DroEre_CAF1 49251 105 - 1 ACUGGGGAGUGUUUUGGGCGGUGGCAGGCCAGGC-----CAGGCCAAAAAGUGCUCCAUAGAAAACAUAUUGUGGAAUUUGUCAACAUUCCUGGGGCAAG-G-CGCCGCGCC---- ...............((((((((.(.((((....-----..))))......(((((((......((.....))(((((........)))))))))))).)-.-)))))).))---- ( -36.10) >DroYak_CAF1 45849 99 - 1 ACUGGGGAGUGUUUUGGGCGGUG----------C-----CACGCCAAAAAGUGCUUCAUAGAAAACAUAUUGUGGAAUUUGUCAACAUUCCUGGGGCGAA-G-CGCCCCGCCCCGC .(((.((((..((((.((((...----------.-----..))))..))))..)))).)))............(((((........))))).((((((..-.-.....)))))).. ( -34.70) >DroAna_CAF1 56932 101 - 1 ACUGGGGAGUGGUCUCCCU-----CCGUCCGUAC--------CCUGAAAAGUGUGCUAUAGAAAACAUAUUGUGGAAUUUGUCAACAUUCCUGAGGCCCAGACCAC--CCCCCCUC ...((((.(((((((.(((-----(.....((((--------.((....)).)))).................(((((........))))).))))...)))))))--.))))... ( -34.80) >consensus ACUGGGGAGUGUUUUAGGUG____CAGGCCAGGC_____CAGGCCAAAAAGUGCUCCAUAGAAAACAUAUUGUGGAAUUUGUCAACAUUCCUGGGGCGAA_G_CGC__C_CC____ .((.(((((((((.............((((...........)))).........(((((((........))))))).......))))))))).))..................... (-17.96 = -19.08 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:56 2006