Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,602,169 – 5,602,266 |
Length | 97 |
Max. P | 0.655049 |
Location | 5,602,169 – 5,602,266 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 94.50 |
Mean single sequence MFE | -15.77 |
Consensus MFE | -12.85 |
Energy contribution | -13.30 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.05 |
Mean z-score | -2.39 |
Structure conservation index | 0.82 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.655049 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5602169 97 - 22224390 CAUUGAACACAUUUUCAAGAAUACCUAUUUAUACCUUUCUCUCUUGAAGGGAAAAUUCUAAAAACUUUAACCUUUUAAGAUCGCAAAUAGACUCAUU ..(((((......)))))......((((((...((((((......)))))).....(((.((((........)))).)))....))))))....... ( -13.20) >DroSec_CAF1 3779 97 - 1 CAUGAAACACAUUUUCAAGAAUACCUAUUUGUACCUUUCUCUCUUGAAGGGAAAACGCUAAAAACUUUAACCUUUUAAGAUCGCAAAUAGACUCAAU ..(((((.....))))).......((((((((.((((((......)))))).............(((.........)))...))))))))....... ( -16.20) >DroSim_CAF1 4310 97 - 1 CAUGAAACACAUUUUCAAGAAUACCUAUUUGUACCUUUCUCUCUUGAAGGGAAAUCGCUAAAAACUUUAACCUUUUAAGAUAGCAAAUAGACUCAAU ..(((((.....))))).......((((((((.((((((......))))))..(((..(((((.........))))).))).))))))))....... ( -17.90) >consensus CAUGAAACACAUUUUCAAGAAUACCUAUUUGUACCUUUCUCUCUUGAAGGGAAAACGCUAAAAACUUUAACCUUUUAAGAUCGCAAAUAGACUCAAU ..(((((.....))))).......((((((((.((((((......)))))).............(((.........)))...))))))))....... (-12.85 = -13.30 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:48 2006