Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,600,443 – 5,600,608 |
Length | 165 |
Max. P | 0.520319 |
Location | 5,600,443 – 5,600,541 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 87.23 |
Mean single sequence MFE | -29.24 |
Consensus MFE | -20.28 |
Energy contribution | -21.32 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.12 |
Mean z-score | -1.72 |
Structure conservation index | 0.69 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520319 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5600443 98 + 22224390 GCGUCGUAGCAGAGAAACGCGAACCUCUCCGCGACCUCUAUCGUGCUCUCUUUUCCACUCACGGUCGUUUAACGGCGCAUAGAGACAACUCUGCGCUA ........((((((...((((........))))..((((((.(((((.......((......)).........)))))))))))....)))))).... ( -30.19) >DroSec_CAF1 2006 90 + 1 GCGUCGUAGCGGA--------AACCUCUCCGCGACCUCUAUCGUGCUCUCUCUUCCACUCACGGUCGUUUAACGGCGCAUAGAGACAACUCUGCACUA (((((((.(((((--------......)))))((((......(((..........)))....)))).....))))))).(((((....)))))..... ( -28.80) >DroSim_CAF1 2545 90 + 1 GCGUCGUAGCGGA--------AACCUCUCCGCGACCUCUAUCGUGCUCUCUCUUCCACUCACGGUCGUUUAACGGCGCAUAGAGACAACUCUGCACUA (((((((.(((((--------......)))))((((......(((..........)))....)))).....))))))).(((((....)))))..... ( -28.80) >DroEre_CAF1 2562 97 + 1 GCGUCGCUGCAAAGCAACGGGACCCUC-CCGCGACCUCUAUCGUGCUCUCUUUUCCGCUCAUGGUCGCUUAACGGCGCAUAGAGACAACUCUGCGCGA (((((((((..((((..((((.....)-))).((((......(((..........)))....))))))))..)))))...((((....)))))))).. ( -31.00) >DroYak_CAF1 2580 97 + 1 GCGUCUUAGCAAAGCAAUGGGACCCUC-CCGCGACCUCUAUCGUGCUCUCUUUUCCGCUCACGGUCGCUUAACGGCGCAUAGAGACAACUCUGCGCGA .(((...(((..(((...(((.....)-))((((......))))))).......(((....)))..)))..)))(((((..(((....)))))))).. ( -27.40) >consensus GCGUCGUAGCAGAG_AA_G_GAACCUCUCCGCGACCUCUAUCGUGCUCUCUUUUCCACUCACGGUCGUUUAACGGCGCAUAGAGACAACUCUGCGCUA (((((((.(.((((..........)))).)((((((......(((..........)))....))))))...))))))).(((((....)))))..... (-20.28 = -21.32 + 1.04)
Location | 5,600,514 – 5,600,608 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 91.81 |
Mean single sequence MFE | -32.30 |
Consensus MFE | -24.62 |
Energy contribution | -25.70 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.11 |
Mean z-score | -1.53 |
Structure conservation index | 0.76 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511613 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5600514 94 + 22224390 ACGGCGCAUAGAGACAACUCUGCGCUAGG---UCGCCUGCUCUCGUUCGCUCUGGCGCGCAAACGGCACUUGGCACACUUCGCACAGUGGCGCCAAA ..(((((.(((((....))))).((((((---(.(((.......((.(((....))).))....)))))))))).((((......)))))))))... ( -35.20) >DroSec_CAF1 2069 94 + 1 ACGGCGCAUAGAGACAACUCUGCACUAGG---UCGCCUGCUCUCGUUCGCUCUGGCGCGCAAACGGCACUUGGCACACUUCGCACACUGGCGCCAAA ..(((((..((((....))))((...(((---(.(((((((...((.(((....))).))....))))...))))).))..))......)))))... ( -29.60) >DroSim_CAF1 2608 97 + 1 ACGGCGCAUAGAGACAACUCUGCACUAAUGAUAGGCCUGCUCUCGUUCGCUCUAGCGCGCAAACGGCACUUGGCACACUUCGCACACUGGCGCCAAA ..(((((..((((....))))((.(((....)))(((((((...((.(((....))).))....))))...))).......))......)))))... ( -28.70) >DroEre_CAF1 2632 94 + 1 ACGGCGCAUAGAGACAACUCUGCGCGAGG---UCGCCUGCUCUCAUUCGCUCUCGCGCGCAAACAGCACUUGGCACACUUUGCACAGUGACGCCAAA ..(((((..((((....))))(((((((.---.((..((....))..))..))))))))).....(((((..(((.....)))..)))).))))... ( -33.50) >DroYak_CAF1 2650 94 + 1 ACGGCGCAUAGAGACAACUCUGCGCGAGG---UCGCCUACUCUCAUUCGCUCUCGCGCGCAAACGGCACUUGGCACACUUUGCACAGUGGCGCCAAA ..(((((..((((....))))(((((((.---.((............))..)))))))))....(.((((..(((.....)))..)))).))))... ( -34.50) >consensus ACGGCGCAUAGAGACAACUCUGCGCUAGG___UCGCCUGCUCUCGUUCGCUCUCGCGCGCAAACGGCACUUGGCACACUUCGCACAGUGGCGCCAAA ..(((((..((((....))))((((((((.....((..((....))..))))))))))))....(.((((..((.......))..)))).))))... (-24.62 = -25.70 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:47 2006