Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,593,084 – 5,593,187 |
Length | 103 |
Max. P | 0.764023 |
Location | 5,593,084 – 5,593,187 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 79.18 |
Mean single sequence MFE | -31.83 |
Consensus MFE | -19.50 |
Energy contribution | -19.58 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.23 |
Mean z-score | -1.78 |
Structure conservation index | 0.61 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.764023 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5593084 103 + 22224390 AAAUAGUAUUAUUAAGAAUAAUGCCGGAGAGCCUGAUCGCCGGCAUUCCGGUGCACUUUCCGUUCGAGCCGUACCCGGUUCAACGGGCGUACAUGGAGAAGGU .....................((((((.((......)).))))))(((((((((....((((((.((((((....)))))))))))).)))).)))))..... ( -36.60) >DroVir_CAF1 1 83 + 1 --------------------AUGCCGGAGAAUAUUAUCGCCGGCAUUCCGGUGCAUUUUCCCUUUGAGCCAUACGAGGUGCAGCGCGCCUACAUGGAGAAGGU --------------------(((((((.((......)).)))))))..............(((((...((((...((((((...))))))..)))).))))). ( -30.80) >DroGri_CAF1 1 83 + 1 --------------------AUGCCGGAGAACAUAAUCGCCGGCAUACCGGUGCAUUUUCCCUUCGAGCCAUACGAUGUGCAGCGCGCUUAUAUGGAAAAGGU --------------------(((((((.((......)).)))))))..............((((....(((((..(.((((...)))))..)))))..)))). ( -25.80) >DroSec_CAF1 1 83 + 1 --------------------AUGCCGGAGAGCCUGAUCGCCGGCAUUCCGGUGCACUUCCCGUUCGAGCCGUAUCCGGUUCAACGGGCGUACAUGGAGAAGGU --------------------.((((((.((......)).))))))(((((((((....((((((.((((((....)))))))))))).)))).)))))..... ( -39.10) >DroEre_CAF1 1 83 + 1 --------------------AUGCCAGAGAGCCUAAUCGCCGGCAUUCCGGUGCACUUCCCGUUCGAACCAUAUCCGGUUCAGCGGGCGUACAUGGAGAAGGU --------------------..(((.....(((........))).(((((((((....((((((.(((((......))))))))))).)))).)))))..))) ( -31.50) >DroAna_CAF1 1 83 + 1 --------------------AUGCCGGAAAGUCUGAUCGCCGGUAUACCGGUGCACUUUCCCUUCGAGCCCUACCCGGUGCAGCGAGCGUACAUGGAGAAGGU --------------------..((((((((((.....((((((....)))))).)))))))(((((.((((.....)).)).((....))...)))))..))) ( -27.20) >consensus ____________________AUGCCGGAGAGCCUGAUCGCCGGCAUUCCGGUGCACUUUCCCUUCGAGCCAUACCCGGUGCAGCGGGCGUACAUGGAGAAGGU ......................(((((((((......((((((....))))))..)))))).(((...((((.((((......)))).....)))).)))))) (-19.50 = -19.58 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:42 2006