Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,592,937 – 5,593,055 |
Length | 118 |
Max. P | 0.661588 |
Location | 5,592,937 – 5,593,055 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.20 |
Mean single sequence MFE | -24.23 |
Consensus MFE | -18.44 |
Energy contribution | -18.67 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.17 |
Mean z-score | -1.96 |
Structure conservation index | 0.76 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661588 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5592937 118 + 22224390 CUCGGAGUUCAAGAUAACGCUAUAAAA--UUACUUAAUCAGGGUCCACUGUACUCUAUCGAUAGCGAUAACUGACCACCUACACAGACAUUUAUUGUUAUCGACCAACGAACACAUGUUC ...(((((...((...((.((......--..........)).))...))..))))).((((((((((((((((..........)))....))))))))))))).....((((....)))) ( -21.79) >DroSim_CAF1 1366 118 + 1 CUUCGAGUUAAAGAUAACCCUAUAAAA--UUUCUUAAUCAGUGUCCACUGUACCUUAUCGAUAGCGAUAACUGACUACCCACACAGACAAUUGUUGUUAUCGACCAACGAACACAUGUUC ......(((..................--.........((((....)))).......(((((((((((((.((.((........)).)).)))))))))))))..)))((((....)))) ( -21.00) >DroYak_CAF1 1818 119 + 1 CUCGGAGUUCAAGAUGACCUAAUAAAAUAUUAUUUAAUCAGAGUCCACCGUACUCUAUCGAUAGCGAUAACUGUUCACC-ACACAUACAGGUAUCGUUAUCGAGCAACGAACACAUGUUC .(((..((((..(((((...(((((....)))))...))(((((.......))))))))((((((((((.((((.....-......)))).))))))))))))))..))).......... ( -29.90) >consensus CUCGGAGUUCAAGAUAACCCUAUAAAA__UUACUUAAUCAGAGUCCACUGUACUCUAUCGAUAGCGAUAACUGACCACC_ACACAGACAAUUAUUGUUAUCGACCAACGAACACAUGUUC ......((((.............................(((((.......))))).(((((((((((((.((..............)).))))))))))))).....))))........ (-18.44 = -18.67 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:41 2006