Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,589,337 – 5,589,442 |
Length | 105 |
Max. P | 0.653105 |
Location | 5,589,337 – 5,589,442 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.20 |
Mean single sequence MFE | -20.47 |
Consensus MFE | -11.31 |
Energy contribution | -12.64 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.08 |
Mean z-score | -1.84 |
Structure conservation index | 0.55 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.653105 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5589337 105 + 22224390 CAGAGUUAUGCACAAAUGUAUAAUAAUUUGAGUUUCGAGCCAAACAAUUUGGUGGUACGCUUUUUGAAAAAAAAAAA----AAAAACUCUGCAAAAAGUGUGAGCUCAA----------- ....((((((((....))))))))...((((((((...(((((.....)))))...((((((((((...........----..........))))))))))))))))))----------- ( -24.40) >DroSec_CAF1 17451 103 + 1 CAGAGUUAUGCACAAAUGUAUAAUAAUUUGAGUUUCAAGCCAAACAAUUUGGUCGUACGCUUUUUGAAAAAAAAAAA----AAAAAA--CGUAAAAAUUAGCAGCUAAA----------- ((((((((((((....))))))))..))))((((.(..(((((.....)))))..((((.(((((............----))))).--)))).......).))))...----------- ( -15.10) >DroEre_CAF1 18097 120 + 1 CAGAGUGAUGCUUAAAUGUAUAAUAGGCGGAGUUUCAAGCCAAACAAUUUGGUAGUACGCUAUUUGAAAAGCAACCAAGCCCAAAACAAAACAAAAAGUAGAAGCAAAAUGCUUUCGGCA .......((((......))))....((..(..(((((((((((.....)))))((....))..))))))..)..))..(((.........((.....)).(((((.....))))).))). ( -21.90) >consensus CAGAGUUAUGCACAAAUGUAUAAUAAUUUGAGUUUCAAGCCAAACAAUUUGGUAGUACGCUUUUUGAAAAAAAAAAA____AAAAAC__AGCAAAAAGUAGAAGCUAAA___________ ....(((((((......))))))).......(((((..(((((.....))))).....((((((((.........................)))))))).)))))............... (-11.31 = -12.64 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:38 2006