Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 722,123 – 722,218 |
Length | 95 |
Max. P | 0.554427 |
Location | 722,123 – 722,218 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 85.80 |
Mean single sequence MFE | -18.73 |
Consensus MFE | -14.75 |
Energy contribution | -15.08 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.87 |
Structure conservation index | 0.79 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554427 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 722123 95 - 22224390 ----CCUCUCUCCUUCCGGCUUUUGGCUUCAAUUCGUUGUGAUUGCUUUGUAUCGAUUACAAAAUGCAUUACAACAUUUGCCACAUGAUAAAUAACACU ----.............(((..(((....)))...((((((((.((((((((.....))))))..))))))))))....)))................. ( -18.30) >DroSec_CAF1 38201 95 - 1 ----CCUCUCUCCUUCCGGCUUUUGGCUUCAAUUCGUUGUGAUUGCUUUGUAUCGAUUACAAAAUGCAUUACAACAUUUGCCACAUGAUAAAUAACACU ----.............(((..(((....)))...((((((((.((((((((.....))))))..))))))))))....)))................. ( -18.30) >DroEre_CAF1 43337 99 - 1 GCUGCCCCUCGCCCACCAGCUUUUGGCUUCAAUUCGUUGUGAUUGCUUUGUACCGAUUACAAAAUGCAUUACAACAUUUGCCACAUGAUAAAUAACACU ((((............))))...((((...(((..((((((((.((((((((.....))))))..))))))))))))).))))................ ( -19.00) >DroWil_CAF1 51995 94 - 1 ----ACUCCAUUCGCCUGGCUUUUGCCUUCAAUUCGUUGUGAUUGCCUUGUAUCGAUUACAAAAUGCAUUACAACAU-UGCCACAUGAUAAAUAACAUA ----....(((..((..(((....)))........((((((((.((.(((((.....)))))...))))))))))..-.))...)))............ ( -18.60) >DroYak_CAF1 39493 95 - 1 ----CCUCUCUUCAUCCGGCGCUGGGCUUCAAUUCGUUGUGAUUGCUUUGUAUCGAUUACAAAAUGCAUUACAACAUUUGCCACAUGAUAAAUAACACU ----.......((((..(((((...))........((((((((.((((((((.....))))))..))))))))))....)))..))))........... ( -20.60) >DroMoj_CAF1 75601 81 - 1 -----------------GGGGCUGGGCUUCAAUUCGUUGUGAUUGCUUUGUAUCGAUUACAAAAUGCAUUACAACAU-UGCCACAUGAUAAAUAACAUC -----------------(((((...))))).....((((((((.((((((((.....))))))..))))))))))..-..................... ( -17.60) >consensus ____CCUCUCUCCUUCCGGCUUUUGGCUUCAAUUCGUUGUGAUUGCUUUGUAUCGAUUACAAAAUGCAUUACAACAUUUGCCACAUGAUAAAUAACACU ........................(((........((((((((.((((((((.....))))))..))))))))))....)))................. (-14.75 = -15.08 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:54 2006