Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,581,718 – 5,581,815 |
Length | 97 |
Max. P | 0.649669 |
Location | 5,581,718 – 5,581,815 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 70.62 |
Mean single sequence MFE | -27.00 |
Consensus MFE | -16.07 |
Energy contribution | -17.15 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.15 |
Mean z-score | -1.29 |
Structure conservation index | 0.59 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.649669 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5581718 97 + 22224390 CUCCAGCAGAAAGAACGAC-CAAUAAAAAAAAGUGGGCGGGGUCAGAGGUCGCACAUGCAAGCUC-U---UCGUGGGGUUAACUUCGCUUACUUAACCCCUG------------------ ...................-..........(((((((((((((........((....)).(((((-(---....)))))).)))))))))))))........------------------ ( -22.80) >DroSec_CAF1 9827 95 + 1 CUCCGGCAGAAAGAACAAC-CAACAA--AAAAGUGGGCGGGGUCAGAGGUCGCACAUGCAAGCCC-U---UCGUGGGGUUAACUUCGCUUACUUAACCCCCG------------------ ...(((......(......-).....--..(((((((((((((........((....)).(((((-(---....)))))).))))))))))))).....)))------------------ ( -25.90) >DroSim_CAF1 9924 81 + 1 --------------ACAAC-CAACAA--AAAAGUGGGCGGGGUCAGAGGUCGCACAUGCAAGCCC-U---UCGUGGGGUUAACUUCGCUUACUUAACCCCCG------------------ --------------.....-......--..(((((((((((((........((....)).(((((-(---....)))))).)))))))))))))........------------------ ( -25.80) >DroEre_CAF1 10258 80 + 1 --------------ACAA--CAGCAA--AAAAGUGGGCGGAGUCAGAGGUCGCACAUGCAAGCCC-U---UCGUGGGGUUAACAUCGCUUACUUAACCCCUG------------------ --------------....--(((...--..(((((((((..((........((....)).(((((-(---....)))))).))..))))))))).....)))------------------ ( -23.20) >DroYak_CAF1 10258 79 + 1 --------------ACUC--C-AUAA--AAAAGUGGGCGGGGUCAGAGGUCGCACAUGCAAGCCC-U---UCGUGGGGUUAACUUCGCUUACUUAACCCCUG------------------ --------------....--.-....--..(((((((((((((........((....)).(((((-(---....)))))).)))))))))))))........------------------ ( -25.80) >DroAna_CAF1 11192 117 + 1 CUCCACCCGCAUCCCCCACCCACCUA-ACCCAUGGGGCGGGGUCAAAGGUUGGUCAUGCAAUACCCCUAGCAGUGGGGUUAACUUU--CUACUUAACCCCCACCACUGCCAGCCAGCCUU .....(((((....((((........-.....)))))))))....((((((((.............((.(((((((((((((....--....))))))))....))))).)))))))))) ( -38.53) >consensus ______________ACAAC_CAACAA__AAAAGUGGGCGGGGUCAGAGGUCGCACAUGCAAGCCC_U___UCGUGGGGUUAACUUCGCUUACUUAACCCCCG__________________ ..............................(((((((((((((........((....)).(((((..........))))).))))))))))))).......................... (-16.07 = -17.15 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:34 2006