Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,569,947 – 5,570,057 |
Length | 110 |
Max. P | 0.913681 |
Location | 5,569,947 – 5,570,057 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 87.39 |
Mean single sequence MFE | -30.30 |
Consensus MFE | -24.52 |
Energy contribution | -24.97 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.05 |
Mean z-score | -2.74 |
Structure conservation index | 0.81 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913681 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5569947 110 + 22224390 CAAAAAAAAAAAAAAGUAAGACUAUGUACAAAACCG-AGGCAAGUGUAGUGUGCUUGCAAAUUUGCGCACAGUGGGACAGGUGGCGCCGCACAGUGGGUGCACACCACCCA ....................(((.((..((((....-..((((((.......))))))...))))..)).)))(((...(((((((((........))))).)))).))). ( -32.70) >DroSec_CAF1 2963 111 + 1 AAAAAAAAAGAAAAAAAAAGAGUAUAUAUAAAACCAAAGGGAAGAGUAGCUUGCUUGCAAAUUUGCGCACAGUGGGACAGGUGGCGCCACACAGUGGGUGCACACCACCCA ......................................(((.......(((..(((((........))).))..)).).(((((((((........))))).)))).))). ( -29.00) >DroSim_CAF1 2952 104 + 1 AAAAAAA-------AAGAAGAGUAUAUAUAAAACCAAAGGGAAGAGUAGCUUGCUUGCAAAUUUGCGCACAGUGGGACAGGUGGCGCCGCACAGUGGGUGCACACCACCCA .......-------........................(((.......(((..(((((........))).))..)).).(((((((((........))))).)))).))). ( -29.20) >consensus AAAAAAAAA_AAAAAAAAAGAGUAUAUAUAAAACCAAAGGGAAGAGUAGCUUGCUUGCAAAUUUGCGCACAGUGGGACAGGUGGCGCCGCACAGUGGGUGCACACCACCCA ......................................(((.......((((((((((........))).)))))).).(((((((((........))))).)))).))). (-24.52 = -24.97 + 0.45)
Location | 5,569,947 – 5,570,057 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 87.39 |
Mean single sequence MFE | -27.60 |
Consensus MFE | -23.45 |
Energy contribution | -23.23 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -1.83 |
Structure conservation index | 0.85 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666104 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5569947 110 - 22224390 UGGGUGGUGUGCACCCACUGUGCGGCGCCACCUGUCCCACUGUGCGCAAAUUUGCAAGCACACUACACUUGCCU-CGGUUUUGUACAUAGUCUUACUUUUUUUUUUUUUUG .(((((((((((((.....)))).)))))))))((...((((((..((((...(((((.........)))))..-....))))..))))))...))............... ( -34.20) >DroSec_CAF1 2963 111 - 1 UGGGUGGUGUGCACCCACUGUGUGGCGCCACCUGUCCCACUGUGCGCAAAUUUGCAAGCAAGCUACUCUUCCCUUUGGUUUUAUAUAUACUCUUUUUUUUUCUUUUUUUUU .(((((((.(((...(((.(((.((((.....)))).))).))).(((....)))..))).)))))))........................................... ( -24.30) >DroSim_CAF1 2952 104 - 1 UGGGUGGUGUGCACCCACUGUGCGGCGCCACCUGUCCCACUGUGCGCAAAUUUGCAAGCAAGCUACUCUUCCCUUUGGUUUUAUAUAUACUCUUCUU-------UUUUUUU .(((((((.(((...(((.(((.((((.....)))).))).))).(((....)))..))).))))))).............................-------....... ( -24.30) >consensus UGGGUGGUGUGCACCCACUGUGCGGCGCCACCUGUCCCACUGUGCGCAAAUUUGCAAGCAAGCUACUCUUCCCUUUGGUUUUAUAUAUACUCUUAUUUUUU_UUUUUUUUU .(((((((((((((.....)))).))))))))).......(((..(((....)))..)))................................................... (-23.45 = -23.23 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:31 2006