Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,543,686 – 5,543,793 |
Length | 107 |
Max. P | 0.917163 |
Location | 5,543,686 – 5,543,793 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 99.38 |
Mean single sequence MFE | -33.78 |
Consensus MFE | -32.88 |
Energy contribution | -32.88 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.19 |
Structure conservation index | 0.97 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.917163 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5543686 107 + 22224390 UUUGAAUAGCCAAUUUGGCAACACUGGCUCAGGUUCGACGUCGAGCCGGGCGGUUCGAACCGAUCGAGAGGAAAAUCUAUUUAAGCAACACACAACUCUCGACACUU (((((((.(((.....))).......((((.((((((....)))))))))).)))))))..(.(((((((.........................)))))))).... ( -33.21) >DroSec_CAF1 5603 107 + 1 UUUGAAUAGCCCAUUUGGCAACACUGGCUCAGGUUCGACGUCGAGCCGGGCGGUUCGAACCGAUCGAGAGGAAAAUCUAUUUAAGCAACACACAACUCUCGACACUU (((((((.((((...((....))........((((((....)))))))))).)))))))..(.(((((((.........................)))))))).... ( -34.91) >DroSim_CAF1 5656 107 + 1 UUUGAAUAGCCAAUUUGGCAACACUGGCUCAGGUUCGACGUCGAGCCGGGCGGUUCGAACCGAUCGAGAGGAAAAUCUAUUUAAGCAACACACAACUCUCGACACUU (((((((.(((.....))).......((((.((((((....)))))))))).)))))))..(.(((((((.........................)))))))).... ( -33.21) >consensus UUUGAAUAGCCAAUUUGGCAACACUGGCUCAGGUUCGACGUCGAGCCGGGCGGUUCGAACCGAUCGAGAGGAAAAUCUAUUUAAGCAACACACAACUCUCGACACUU (((((((.(((.....))).......((((.((((((....)))))))))).)))))))..(.(((((((.........................)))))))).... (-32.88 = -32.88 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:27 2006