Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,542,499 – 5,542,602 |
Length | 103 |
Max. P | 0.500000 |
Location | 5,542,499 – 5,542,602 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.71 |
Mean single sequence MFE | -30.04 |
Consensus MFE | -21.30 |
Energy contribution | -21.34 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.06 |
Mean z-score | -1.24 |
Structure conservation index | 0.71 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5542499 103 - 22224390 AUCCAUGGAGGCGACCGAUCAGGGGGCGGUGUAUUCCGCCAAGGACACACCGUUAAAUGCGCACAAUUGCCGGCGGGGCUG---------AAAAC-AAACCAAGAAAAAA-------UAA .....(((..(((.((.....)).((((((((..(((.....))).)))))))).....)))......(((.....)))..---------.....-...)))........-------... ( -27.20) >DroSec_CAF1 4419 102 - 1 AUCCAUGGAGGCGGCCGAUCAGGGGGCGGUGUAUUCCGCCAAGGACACACCGUUAAAUGCGCACAAUUGCCGGCGGGGCAG---------AAAAACAAACCAAGAAAAAAA--------- .....(((..(((.((.....)).((((((((..(((.....))).)))))))).....)))....(((((.....)))))---------.........))).........--------- ( -29.20) >DroSim_CAF1 4143 104 - 1 AUCCAUGGAGGCGGCCGAUCAGGGGGCGGUGUAUUCCGCCAAGGACACACCGUUAAAUGCGCACAAUUGCCGGCGGGGCAG---------AAAAACA-ACCAAGAAAAAAA-----AUA- .....(((..(((.((.....)).((((((((..(((.....))).)))))))).....)))....(((((.....)))))---------.......-.))).........-----...- ( -29.20) >DroEre_CAF1 4589 100 - 1 --------UGGCGGCCGACCAGGGGGCGGUGUAUUCCGCCAAGGACACACCGUUAAAUGUGGAAAAUUGCCGGCGGGCCAGCAGC---AGCAUAC-AAAACA-----AAGAG--GAAAA- --------((((.((((.(((.(.((((((((..(((.....))).))))))))...).)))........))))..))))((...---.))....-......-----.....--.....- ( -29.50) >DroYak_CAF1 4332 110 - 1 --------AGGCGGCCGAUCAGGGGGCGGUGUAUGCCGCCAAGGACACACCGUUAAAUGUGGAAAAUUGCCGGCGGCCCAGCAGCAGCAGCAUAA-AAAGCACAAAAAAGAGCUGAAUA- --------.(((.((((.((....((((((....))))))...))((((........)))).........)))).)))((((.((....))....-......(......).))))....- ( -35.10) >consensus AUCCAUGGAGGCGGCCGAUCAGGGGGCGGUGUAUUCCGCCAAGGACACACCGUUAAAUGCGCACAAUUGCCGGCGGGGCAG_________AAAAA_AAACCAAGAAAAAAA_____AUA_ .........(((((((.....)).((((((((..(((.....))).))))))))............)))))................................................. (-21.30 = -21.34 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:19 2006